View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_2 (Length: 686)
Name: NF14439_low_2
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 686
Target Start/End: Original strand, 36391008 - 36391689
Alignment:
| Q |
18 |
attgtgaggcaaatagaatgtgaaaagtgtatcctcatcatcaccgattgagtaagtgaaggctttgaatgagacacgtctgtaaaacgaggtaagcaag |
117 |
Q |
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| T |
36391008 |
attgtgaggcaaatagaatgtgaaaagtgtatcctcatcatcaccgattgagtaagtgaaggctttgaatgagacacgtctgtaaaacgaggtaagcaag |
36391107 |
T |
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| Q |
118 |
tttgtaaaacgatggcaagtggcagtttgactaagagaatatttaattaggttatatgtttttgggaccaagttttgttcactaccttaattttcatact |
217 |
Q |
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| T |
36391108 |
tttgtaaaacgatggcaagtggcagtttgactaagagaatatttaattaggttatatgtttttgggaccaagttttgttcactaccttaattttcatact |
36391207 |
T |
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| Q |
218 |
taataaaaatgacgtgacatattataaactagtattatatccgtgataagcacgagcgattttagtcctatttaaaagagagaatgttgtgacg------ |
311 |
Q |
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| T |
36391208 |
taataaaaatgacgtgacatattataaactagtattatatccgtgataagcacgagcgattttagtcctatttaaaagagagaatgttgtgacgtattta |
36391307 |
T |
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| Q |
312 |
----tagttacattttaatattgaataaattaatattacatatagggaaactaataagtgagaaaattcttat-aatgttttaaattatttcgttaagat |
406 |
Q |
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| T |
36391308 |
gtgttagttacattttaatattgaataaattaagattacatatagggaaactaataagtgagaaaactcgtataaatgttttaaattatttcgttaagat |
36391407 |
T |
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| Q |
407 |
atggtatcatttttacttagatgttgcttgtccaattgatcgatccataccattgttaacttctctaggaagttcaacaatggaagcatagcccggttcg |
506 |
Q |
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| T |
36391408 |
gtggtatcatttttacttagatgttgcttgtccaattgatcgattcacaccattgttaacttctccaggaagttcaacaatggaagcatagcccggttcg |
36391507 |
T |
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| Q |
507 |
acttaatgggggaagggtaagtggttcttagtggtaaatcacggatgcggcgcgtcttacatttgagggagaaaatttaatgcgt-aagtgtgagttaat |
605 |
Q |
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| T |
36391508 |
acttagtgggggaagggtaagtggttcttagtggtagatcacgtatgcggagagtcttatacttgaaggagaaaatttaatgcgtcaagtgtgggttaat |
36391607 |
T |
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| Q |
606 |
gttctccattgtatacacgagtatatgttgagaaacacataggatataagacac--ataactaataccttaaagtttagggtg |
686 |
Q |
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| T |
36391608 |
gttctacattagatccaagagtatatgttgagaaacacgtaggatataagacacatataactaatgccttaaa-tttagggtg |
36391689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 36364707 - 36364774
Alignment:
| Q |
28 |
aaatagaatgtgaaaagtgtatcctcatcatcaccgattgagtaagtgaaggctttgaatgagacacg |
95 |
Q |
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| T |
36364707 |
aaatggaatgtgaaaaatgtatcctcatcatcaccgatttagtaattgaaggctttgaatgagacacg |
36364774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 657
Target Start/End: Complemental strand, 5786093 - 5785917
Alignment:
| Q |
482 |
aacaatggaagcatagcccggttcgacttaatgggggaagggtaagtggttcttagtggtaaatcacggatgcggcgcgtcttacatttgagggagaaaa |
581 |
Q |
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| T |
5786093 |
aacaatggtagcatagcccggttcgactttgtgggggatgggtgagtggttcctagtggtagatcatggatgtggagagtctcatactgaagggagataa |
5785994 |
T |
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| Q |
582 |
tttaatgcgt-aagtgtgagttaatgttctccattgtatacacgagtatatgttgagaaacacataggatataagac |
657 |
Q |
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| T |
5785993 |
gttaatgtgtcaagtgtgagttacagttcaacatttgatgcaagagtttatgttgagaaacacataggtgataagac |
5785917 |
T |
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