View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_20 (Length: 391)
Name: NF14439_low_20
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 39 - 382
Target Start/End: Original strand, 5537952 - 5538279
Alignment:
| Q |
39 |
ggtaccttcaagtactccaacgtttaaccaaatatgaatgaaaatgagtggaagcctaagacatgatgggatagaaaatgtgtacattttgcaagatttt |
138 |
Q |
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| T |
5537952 |
ggtaccttcaagtactccaacctttaaccaaatatgaa----aatgagtggaagtc-aaggcatgatgggatagaaaatgtatacattttgcaagattt- |
5538045 |
T |
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| Q |
139 |
gaccagtatataagacttggattccttgatgtagaaactccacgctgcagtggatctcaactgtatattttagattgggtggttctgattccgaacacgt |
238 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||| ||||| ||||||||| |
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| T |
5538046 |
---------ata-gacttggattccttgatgtagaaactccacgctgtagtggatctcagccgtatattttagattgggcggttatgatttcgaacacgt |
5538135 |
T |
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| Q |
239 |
tttcacacagtaaaatgatctcaaccacttatttacaatggaacggaccaaatcagttacatcaagatacatcatcttgatgtaaccgtgggatatccat |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
5538136 |
tttcacacagtaaaatgatctcaaccacttatttacaatcgaacggacctaatcagttacatcaagatacatattcctgatgtaaccgtgggatatccat |
5538235 |
T |
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| Q |
339 |
ttcctatatttatagtgaaggaatgatttaaggaaaatgatgat |
382 |
Q |
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| T |
5538236 |
ttcctatatttatagtgaacgaatgatttaaggaaaatgatgat |
5538279 |
T |
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