View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_21 (Length: 390)
Name: NF14439_low_21
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 24515311 - 24515669
Alignment:
| Q |
13 |
aagaatatgacaccagnnnnnnnctagatgaagaagaaaataaaacaacattgttagaataaacatgagagaacaatgtagagtactagaattatgttga |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24515311 |
aagaatatgacaccagaaaaaaactagatgaagaagaaaataaaacaacattgttagaataaacatgagagaacaatgtagagtactagaattatgttga |
24515410 |
T |
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| Q |
113 |
aggagtaaagagaagagaaaggctttacccaaaggttgcctctgaggaagcctagtgtgtttatggcattatgagcaagatcaaaaaatgatatgctcag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24515411 |
aggagtaaagagaagagaaaggctttacccaaaggttgcctctgaggaagcctagtgtgtttatggcattatgagcaagatcaaaaaatgatatgctcag |
24515510 |
T |
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| Q |
213 |
cattaaaccagcagcaaaaccctttatttcacatttcacaaaaggtgaagttagaaaagattaaaaatgaacctatgcaacctcaagacagataaaattg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24515511 |
cattaaaccagcagcaaaaccctttatttcacatttcacaaaaggtgaagttagaaaagattaaaaatgaacctatgcaaccacaagacagataaaattg |
24515610 |
T |
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| Q |
313 |
ataaaatatttggtttgaattattaaagatttcgtgcctatgaagcatgaacagacatg |
371 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
24515611 |
ataaaatatttggtttgaattattaaagattttgtgcctgtgaagcatgaacagacatg |
24515669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 41949153 - 41949251
Alignment:
| Q |
138 |
tacccaaaggttgcctctgaggaagcctagtgtgtttatggcattatgagcaagatcaaaaaatgatatgctcagcattaaaccagcagcaaaaccctt |
236 |
Q |
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|||||||||||||||| | | |||||| |||| |||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
41949153 |
tacccaaaggttgcctttcaagaagcccagtgagtttatagcattatgagccagatcaaagaatgatatgctcagcatcaaaccagcagcaaaaccctt |
41949251 |
T |
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