View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_25 (Length: 363)
Name: NF14439_low_25
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 24 - 354
Target Start/End: Complemental strand, 53089410 - 53089063
Alignment:
| Q |
24 |
agtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagttt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53089410 |
agtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagttt |
53089311 |
T |
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| Q |
124 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacccttctcttagga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53089310 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacccttctcttagga |
53089211 |
T |
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| Q |
224 |
agaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatg-----------------atga |
306 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53089210 |
agaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgagtgacgagtttgtatga |
53089111 |
T |
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| Q |
307 |
attttagcgagtataagtatgctatatgcattacattaccagaataat |
354 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53089110 |
attttagcgagtataagtatgctatatgcatcacattaccagaataat |
53089063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 14334119 - 14333826
Alignment:
| Q |
24 |
agtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagttt |
123 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14334119 |
agtgaaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaattt |
14334020 |
T |
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| Q |
124 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctca---------aggtgttgagaagttggaaaggcaccctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14334019 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcaccctt |
14333920 |
T |
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| Q |
215 |
ctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
14333919 |
ctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatgatgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 14333814 - 14333763
Alignment:
| Q |
303 |
atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
354 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccagattaat |
14333763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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