View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_low_26 (Length: 362)

Name: NF14439_low_26
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_low_26
NF14439_low_26
[»] chr6 (1 HSPs)
chr6 (31-346)||(24589660-24589955)
[»] chr1 (3 HSPs)
chr1 (71-149)||(11749638-11749716)
chr1 (76-148)||(2071570-2071642)
chr1 (76-148)||(2075100-2075172)
[»] chr4 (1 HSPs)
chr4 (71-110)||(11096828-11096867)
[»] chr8 (1 HSPs)
chr8 (120-148)||(24726674-24726702)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 31 - 346
Target Start/End: Original strand, 24589660 - 24589955
Alignment:
Q  31 ctaggattttttagaatatcaatagcttaacataatgtattatagaaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaa 130  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||       |||||    
T  24589660 ctaggatttcttagaatatcaatagcttaacattatgtactatagaaaacctaatgtactattaacttagtaatataaatgccgatta-------accaa 24589752  T
Q  131 tattttactatctaacacaaattaattttgaattatatttaatcgtagtcaagattaagagaaaatgtatataatggtatcgtttattataaatgtatat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||             ||||||||    
T  24589753 tattttactatctaacacaaattaattttgaattatatttaattgtagtcaagattaagaaaaaatgtatataatggta-------------atgtatat 24589839  T
Q  231 tttattatctaaccttataatgaattaattttgaattataaactagattaacaacaaatttatatcaactgctgctcaaaccattaatagtgtcatatca 330  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24589840 tttattatctaaccttatattgaattaattttgaattataaactagattaacaacaaatttatatcaactgctgctcaaaccattaatagtatcatatca 24589939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 11749638 - 11749716
Alignment:
Q  71 tatagaaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaatattttactatctaacaca 149  Q
    |||| |||||||| || |||||||||||||||||||||| | || ||| |||||| | ||||||||| | |||||||||    
T  11749638 tatataaaacctattgaactattaacttagtaatataaaggtcggttatcttaagtcaaatattttattttctaacaca 11749716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 2071570 - 2071642
Alignment:
Q  76 aaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaatattttactatctaacac 148  Q
    ||||||||||| |||  ||||||| |||||| || ||| | ||||||||| ||||||||||| ||||||||||    
T  2071570 aaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacac 2071642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 2075100 - 2075172
Alignment:
Q  76 aaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaatattttactatctaacac 148  Q
    ||||||||||| |||  ||||||| |||||| || ||| | ||||||||| ||||||||||| ||||||||||    
T  2075100 aaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacac 2075172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 11096867 - 11096828
Alignment:
Q  71 tatagaaaacctaatgcactattaacttagtaatataaat 110  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  11096867 tatagaaaatctaatggactattaacttagtaatataaat 11096828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 24726702 - 24726674
Alignment:
Q  120 cttaagaccaatattttactatctaacac 148  Q
    |||||||||||||||||||||||||||||    
T  24726702 cttaagaccaatattttactatctaacac 24726674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University