View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_27 (Length: 354)
Name: NF14439_low_27
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 2778041 - 2777714
Alignment:
| Q |
20 |
gaccgcatcttgattgcgcctgtcccgactgcacctaatccaatgatcttaattttgatgttgtttttgaattgtgcttcgaactgaccaagagatgtga |
119 |
Q |
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| T |
2778041 |
gaccgcatcttgattgcgcctgtcccgactgcacctaatccaatgatcttaattttgatgttgtttttgaattgtgcttcgaactgaccaagagatgtga |
2777942 |
T |
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| Q |
120 |
tcatgctacaaagcttgaagcatttactctcattttcatttcaaagctttcatgtggaatgtggattctttaagatgcaaattaatatgattacgcatag |
219 |
Q |
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| T |
2777941 |
tcatgctacaaagcttgaagcatttactctcattttcatttcaaagctttcatgtggaatgtggattctttaagatgcaaattaatatgattacgcatag |
2777842 |
T |
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| Q |
220 |
ccaatttaaaatgaccatatgccatactagttcttaatttgcgtgtgagaaagggatacaaaccacaacaaaatcacgagagaaattgatttggagaggt |
319 |
Q |
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| T |
2777841 |
ccaatttaaaatgaccatatgccatactagttcttaatttgcgtgtgagaaagggatacaaaccacaacaaaatcacgagagaaattgatttggagagat |
2777742 |
T |
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| Q |
320 |
gtgtgtcaaaacataaaaatgatgatgt |
347 |
Q |
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| T |
2777741 |
gtgtgtcaaaacataaaaatgatgatgt |
2777714 |
T |
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