View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_29 (Length: 339)
Name: NF14439_low_29
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 3314325 - 3314009
Alignment:
| Q |
7 |
taaattatactgggaggccctcttagaagaaaaagaaaatagcaaacctacaacgtaaccaactaaattatttaacaaacaaataaacctttttctaggg |
106 |
Q |
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| T |
3314325 |
taaattattttgggaggccctcttagaagaaaaagaaaatagcaaacctacaacgtaaccaactaaattatttaacaaacaaataaacctttttctaggg |
3314226 |
T |
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| Q |
107 |
aacaccaaatttagatatttgttgtggggtcatgctaacgtccttggtcttcaaacaaatataacaaaatgacaaaatatttgtcacaaacnnnnnnnca |
206 |
Q |
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| T |
3314225 |
aacaccaaatttagatatttgttgtagggtcatgctaacgtgcttggtcttcaaacaaatataacaaaatgacaaaatatttgtcacaaac-aaaaaaca |
3314127 |
T |
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| Q |
207 |
ttattgccttcatagaagaaaagatctatggacattatttagagcaagacttacagtatatgccttgggagtatcatatccaagaacaatatcacctaag |
306 |
Q |
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| T |
3314126 |
ttattgccttcatagaagaaaagatctatggacattatttagagcaagacttacagtatatgccttgggagtatcatatccaagaacaatatcacctaag |
3314027 |
T |
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| Q |
307 |
tttcctgagacaaattaa |
324 |
Q |
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| T |
3314026 |
tttcctgagacaaattaa |
3314009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 3320902 - 3320822
Alignment:
| Q |
244 |
tttagagcaagacttacagtatatgccttgggagtatcatatccaagaacaatatcacctaagtttcctgagacaaattaa |
324 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3320902 |
tttagaacaagacttacagtatatgcctttggagtatcatatccaagaacaatatcacctaattttcctgagacaaattaa |
3320822 |
T |
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