View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_3 (Length: 621)
Name: NF14439_low_3
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 91 - 572
Target Start/End: Original strand, 31206967 - 31207454
Alignment:
| Q |
91 |
gaatgttgttgaagatgatgttgttttcatgatgcagtacgtgagggaaaattattcatttttatagatccatatatccatgttaaaagtaaatatgaag |
190 |
Q |
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| T |
31206967 |
gaatgttgttgaagatgatgttgttttcatgatgcagtacgtgagggaaaattattcatttttatagatccatatatccatgtaaaaagtaaatatgaag |
31207066 |
T |
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| Q |
191 |
aatttaaaa------agaaaaagatgacattttcaataggcccaacataaaggagaccctactaataaagttttgattgaattaggcttccactaaaaat |
284 |
Q |
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| T |
31207067 |
aatttaaaaagaaaaagaaaaagatgacattttcaataggcccaacataaaggagaccctactaataaagttttgattgaattaggcttccactaaaaat |
31207166 |
T |
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| Q |
285 |
aatataattgctatataagggatcttcttacttttatgcttcgtgttactcgtgatatggtttgagaatgttctttttccacatcatagtaaacaaatta |
384 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31207167 |
aatacaattgctatataagggatcttcttacttttatgcttcgtgttactcgtgatatggtttgagaatgttctttttccacataatagtaaacaaatta |
31207266 |
T |
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| Q |
385 |
aatctgaacatgttatgcttcaaattaataataaattatgacgagtattgaccataaacagcaaatagacaaattacgcggttataagaaaatagattaa |
484 |
Q |
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| T |
31207267 |
aatctgaacatgttatgcttcaaattaataataaattatgacgagtattgaccataaacagcaaatagacaaattacgcggttataagaaaatagattaa |
31207366 |
T |
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| Q |
485 |
accattagaggctgaagatgatttatataattactagctagagaaacttttaatttcagtcaaaacttttataagagagactattaag |
572 |
Q |
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| T |
31207367 |
accattagaggctgaagatgatttatataattactagctagagaaacttttaatttcagtcaaaacttttataagagagactattaag |
31207454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 31185985 - 31186071
Alignment:
| Q |
196 |
aaaaagaaaaagatgacattttcaataggcccaacataaaggagaccctactaataaagttttgattgaattaggcttccactaaaa |
282 |
Q |
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||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| | |||| ||||||||||||||||| |
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| T |
31185985 |
aaaaagaaaaagatgacattttcaacaggcccgacataaagtagaccctactaataaagttgtttttgatttaggcttccactaaaa |
31186071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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