View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_30 (Length: 326)
Name: NF14439_low_30
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 53090725 - 53090428
Alignment:
| Q |
17 |
aagatgaataagaataaagagggtgtgatgctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattat |
116 |
Q |
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| T |
53090725 |
aagatgaataagaataaagagggtgtgatgctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattat |
53090626 |
T |
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| Q |
117 |
tcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttattagaatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090625 |
tcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttattagaatatc |
53090526 |
T |
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| Q |
217 |
aaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctcctatcctatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090525 |
aaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctcctatcctatg |
53090428 |
T |
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