View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_low_35 (Length: 301)

Name: NF14439_low_35
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_low_35
NF14439_low_35
[»] chr4 (9 HSPs)
chr4 (1-285)||(6132500-6132783)
chr4 (1-139)||(27498963-27499088)
chr4 (1-137)||(38270409-38270543)
chr4 (1-74)||(2891174-2891247)
chr4 (71-139)||(47564496-47564564)
chr4 (49-110)||(3937678-3937739)
chr4 (101-137)||(2891134-2891170)
chr4 (95-137)||(18537987-18538029)
chr4 (98-139)||(18535298-18535339)
[»] chr1 (13 HSPs)
chr1 (1-138)||(50248997-50249134)
chr1 (50-137)||(17323785-17323872)
chr1 (71-136)||(25251749-25251814)
chr1 (54-150)||(17186605-17186701)
chr1 (71-139)||(25248988-25249056)
chr1 (71-140)||(31489724-31489793)
chr1 (1-140)||(18839306-18839443)
chr1 (105-139)||(31423403-31423437)
chr1 (96-145)||(15669891-15669940)
chr1 (96-137)||(18801068-18801109)
chr1 (103-139)||(16430821-16430857)
chr1 (105-137)||(17352797-17352829)
chr1 (105-145)||(50308045-50308085)
[»] chr3 (17 HSPs)
chr3 (1-140)||(36011524-36011663)
chr3 (1-135)||(1627104-1627238)
chr3 (1-138)||(5927188-5927325)
chr3 (4-137)||(53468879-53469002)
chr3 (49-135)||(28102471-28102558)
chr3 (61-137)||(7754063-7754139)
chr3 (71-139)||(28137765-28137833)
chr3 (69-139)||(28100530-28100600)
chr3 (49-140)||(43421883-43421974)
chr3 (51-137)||(8183163-8183249)
chr3 (97-137)||(43423960-43424000)
chr3 (96-139)||(25635120-25635163)
chr3 (96-138)||(562207-562249)
chr3 (5-55)||(7754137-7754187)
chr3 (96-137)||(13420686-13420727)
chr3 (96-137)||(25633231-25633272)
chr3 (103-139)||(23636725-23636761)
[»] chr2 (7 HSPs)
chr2 (1-137)||(14836971-14837106)
chr2 (11-135)||(34980012-34980136)
chr2 (49-140)||(15539947-15540038)
chr2 (68-137)||(11740009-11740078)
chr2 (71-137)||(22163419-22163485)
chr2 (59-137)||(3021839-3021917)
chr2 (106-137)||(38019884-38019915)
[»] chr7 (8 HSPs)
chr7 (1-142)||(24748341-24748482)
chr7 (1-137)||(21677796-21677932)
chr7 (1-135)||(21679759-21679893)
chr7 (69-138)||(27833125-27833194)
chr7 (68-138)||(44724329-44724399)
chr7 (1-137)||(39146389-39146524)
chr7 (71-137)||(22829105-22829171)
chr7 (105-142)||(11355005-11355042)
[»] chr6 (13 HSPs)
chr6 (1-137)||(22490415-22490551)
chr6 (9-135)||(10583884-10584010)
chr6 (49-137)||(13056949-13057037)
chr6 (49-137)||(3632406-3632494)
chr6 (1-76)||(24338871-24338946)
chr6 (50-137)||(24338941-24339028)
chr6 (69-139)||(3630354-3630424)
chr6 (49-137)||(13039509-13039597)
chr6 (46-138)||(13870818-13870910)
chr6 (96-140)||(26944923-26944967)
chr6 (101-137)||(12162024-12162060)
chr6 (1-43)||(12161977-12162019)
chr6 (60-110)||(20219939-20219989)
[»] chr5 (7 HSPs)
chr5 (1-137)||(24126579-24126712)
chr5 (1-134)||(2723698-2723823)
chr5 (1-110)||(10474746-10474856)
chr5 (1-120)||(17072619-17072739)
chr5 (71-137)||(695631-695697)
chr5 (78-139)||(20044755-20044816)
chr5 (49-137)||(20042770-20042858)
[»] chr8 (4 HSPs)
chr8 (1-140)||(27107320-27107458)
chr8 (1-137)||(26774978-26775114)
chr8 (71-138)||(33541860-33541927)
chr8 (54-137)||(15186164-15186247)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 6132783 - 6132500
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||    
T  6132783 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtaccctgaaaatcagccaccgattttcagcttccaga 6132684  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaattataaagaaaaccttccttnnnnnnnnngtacaaagaaaacttgcatttcaaaccgtggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||    
T  6132683 attccaatttcttcaattttgaggcactttcacaacaattataaagaaagccttcctt-aaaaaaaagtacaaagaaaacttgcatttcaaaccgtggca 6132585  T
Q  201 ttaattgtaccatcgtcaattacaaatacaatgacaaagcgaaacagttaagaaaaaatgatatgcataaaactgtaataaaaga 285  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6132584 ttaattgtaccattgtcaattacaaatacaatgacaaagcgaaacagttaagaaaaaatgatatgcataaaactgtaaaaaaaga 6132500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 27499088 - 27498963
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||| ||||||             |||||||| ||||    
T  27499088 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccctgccctgaaaa-------------ttcagcttccaga 27499002  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27499001 attccaatttcttcaattttgaggcactttcacaacaat 27498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 38270409 - 38270543
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||| |||||||||||||||| || || |||| ||||||   |||||||||  | ||||| ||||||||| |||||| |||||| |||  ||||    
T  38270409 aaatcggccatcgatttttgccgaaccaaaggc-caaa-aaaacagtccaaaatcggctatcgtgctttgaaaatcggccaccgattttctgctaccaga 38270506  T
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||| |||||||||||||||||||||||||||||||||    
T  38270507 atttcaatttcttcaattttgaggcactttcacaaca 38270543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2891247 - 2891174
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaa 74  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||    
T  2891247 aaatcggccaccgatttttgccgaacctgaagctcaaataaaataggtcaaaatcggccaccgtgccctgaaaa 2891174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 47564564 - 47564496
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||| |||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  47564564 aaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaat 47564496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 3937678 - 3937739
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 110  Q
    ||||||||| ||||| ||| |||||||| |||||| |||||| |||||||||||||||||||    
T  3937678 caaaatcggccaccgagccctgaaaatcggccaccgattttctgctttcagaattccaattt 3937739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 2891170 - 2891134
Alignment:
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  2891170 attccaatttcttcaattttgaggcactttcacaaca 2891134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 18537987 - 18538029
Alignment:
Q  95 ttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||| | ||||||||||||||||||| |||||||||||||    
T  18537987 ttcagaacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 18535298 - 18535339
Alignment:
Q  98 agaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  18535298 agaactccaatttcttcaatattgagtcactttcacaacaat 18535339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 50248997 - 50249134
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||  || ||||||||||| ||||    
T  50248997 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcagcggccgattttcagcttccaga 50249096  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaa 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50249097 attccaatttcttcaattttgaggcactttcacaacaa 50249134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 17323872 - 17323785
Alignment:
Q  50 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||||| ||||| ||| |||||||| | |||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  17323872 aaaatcggccaccgagccctgaaaatcggtcaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 17323785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 25251749 - 25251814
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaac 136  Q
    |||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  25251749 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaac 25251814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 17186605 - 17186701
Alignment:
Q  54 tcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaattataaagaaaa 150  Q
    |||| ||||| ||| ||||||||||||||| |||||| |||| |||| || ||||||||||||||||||| | |||||||||||| ||| |||||||    
T  17186605 tcggccaccgagccctgaaaatcagccaccgattttctgcttccagattttcaatttcttcaattttgagtcgctttcacaacaaatatgaagaaaa 17186701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 25248988 - 25249056
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  25248988 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactatcacaacaat 25249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 31489793 - 31489724
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 140  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  31489793 aaaatcggcccccaattttctgcttccagaattccaatttcttcaattttaaggcactttcgcaacaatt 31489724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18839443 - 18839306
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    ||||||||||||||||||||||||||| | ||  |||| || | |   ||||||||| ||||||||  ||||| || |||| | |||||| | |  ||||    
T  18839443 aaatcggccaccgatttttgccgaaccaacagg-caaaaaacagagtccaaaatcggccaccgtgctctgaaa-tcggccatcgattttctgttaccaga 18839346  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaatt 140  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  18839345 attccaatttattcaattttgaggcactttcacaataatt 18839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 31423403 - 31423437
Alignment:
Q  105 caatttcttcaattttgaggcactttcacaacaat 139  Q
    ||||||||||||||||||| |||||||||||||||    
T  31423403 caatttcttcaattttgagtcactttcacaacaat 31423437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 15669891 - 15669940
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaacaattataaa 145  Q
    |||||| |||||||||||||||||| ||  |||||||||||| |||||||    
T  15669891 tcagaactccaatttcttcaattttaagttactttcacaacatttataaa 15669940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 18801068 - 18801109
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||| ||||||| ||||||||||||| |||||||||||||    
T  18801068 tcagaactccaattccttcaattttgagtcactttcacaaca 18801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 16430857 - 16430821
Alignment:
Q  103 tccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||||| |||||||||||| |||||||||||||||    
T  16430857 tccaatttattcaattttgagtcactttcacaacaat 16430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 17352829 - 17352797
Alignment:
Q  105 caatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||||||||||||| |||||||||||||    
T  17352829 caatttcttcaattttgagtcactttcacaaca 17352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 50308045 - 50308085
Alignment:
Q  105 caatttcttcaattttgaggcactttcacaacaattataaa 145  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  50308045 caatttctccaattttgagtcactttcacaacaatgataaa 50308085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 36011663 - 36011524
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||  |||||| ||||||| ||| ||||    
T  36011663 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccttgaaaattggccaccgattttcaccttccaga 36011564  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaatt 140  Q
     |||||||||||||||||||||||||||||||||||||||    
T  36011563 tttccaatttcttcaattttgaggcactttcacaacaatt 36011524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 1627104 - 1627238
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||| | |||||||| |||||| ||||||||||| ||||    
T  1627104 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgtgtcctgaaaatcggccaccgattttcagcttccaga 1627203  T
Q  101 attccaatttcttcaattttgaggcactttcacaa 135  Q
    |||||||||||||||||||||||||||||||||||    
T  1627204 attccaatttcttcaattttgaggcactttcacaa 1627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 5927188 - 5927325
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||| ||||   || ||||||  |||||||||||||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||||| || |    
T  5927188 aaatcggccatcgataaatgtcgaaccagaagctcaaataaaacaggtcaaaatcggccaccgtgctctgaaaatcagccaccgattttcagcttccaaa 5927287  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaa 138  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5927288 attccaatttcttcaattttaaggcactttcacaacaa 5927325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 53468879 - 53469002
Alignment:
Q  4 tcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaatt 103  Q
    |||||||||| |||||||||||||| ||||||||||||||   ||||||||||| ||||||||| |||||||| ||          ||||||  ||||||    
T  53468879 tcggccaccggtttttgccgaacctgaagctcaaataaaaatggtcaaaatcggccaccgtgccctgaaaatcggc----------cagcttatagaatt 53468968  T
Q  104 ccaatttcttcaattttgaggcactttcacaaca 137  Q
    | ||||||||||||||||||||||||||||||||    
T  53468969 ctaatttcttcaattttgaggcactttcacaaca 53469002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 28102471 - 28102558
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattcc-aatttcttcaattttgaggcactttcacaa 135  Q
    ||||||||| |||||  ||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  28102471 caaaatcggccaccgaaccttgaaaatcagcccccgattttctgctttcagaattccaaatttattcaattttgaggcactttcacaa 28102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 7754139 - 7754063
Alignment:
Q  61 ccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||| |||||||| |||| | ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7754139 ccgtgccctgaaaatcggccagcgatttttagcttccagaattccaatttcttcaattttgagccactttcacaaca 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 28137765 - 28137833
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||| |||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28137765 aaaatcggccaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 28100530 - 28100600
Alignment:
Q  69 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||||| |||| | ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  28100530 tgaaaatcggccatcgattttctacttccagaattccaatttcttcaattttgaggcactttcacaacaat 28100600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 43421883 - 43421974
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 140  Q
    ||||||||| ||||||   ||||||||| ||||   |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  43421883 caaaatcggccaccgtagtttgaaaatcggccatttattttctgctacctgaattccaatttcttcaattttgaggcactttcacaacaatt 43421974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 8183163 - 8183249
Alignment:
Q  51 aaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||| ||||||||  ||||||||   |||  |||||| ||| |||||||| |||||||||||||||||||||||||||||||||    
T  8183163 aaatcggccaccgtgctctgaaaatcgatcactgattttctgctatcagaatttcaatttcttcaattttgaggcactttcacaaca 8183249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 43423960 - 43424000
Alignment:
Q  97 cagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43423960 cagaattccaatttcttcaattttgaggcactttcacaaca 43424000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 25635163 - 25635120
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  25635163 tcagaactccaatttcttcaattttgagtcactttcacaacaat 25635120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 562207 - 562249
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaacaa 138  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  562207 tcagaactccaatttcttcaattttgagtcactttcacaacaa 562249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 7754137 - 7754187
Alignment:
Q  5 cggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatc 55  Q
    |||||| ||||||||||||||| | |||||||||||||||| |||||||||    
T  7754137 cggccatcgatttttgccgaacttgaagctcaaataaaacaggtcaaaatc 7754187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 13420686 - 13420727
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  13420686 tcagaactccaatttcttcaattttgagtcactttcacaaca 13420727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 25633272 - 25633231
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  25633272 tcagaactccaatttcttcaattttgaatcactttcacaaca 25633231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 23636761 - 23636725
Alignment:
Q  103 tccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||||||| |||||||||| |||||||||||||||    
T  23636761 tccaatttctccaattttgagtcactttcacaacaat 23636725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14837106 - 14836971
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||| ||||    
T  14837106 aaatcggccgccgatttttgccgaacctgaagctcaaataaaacatgtcaaaatcggccaccgtgccctgaaaa-cggccaccaattttcagcttccaga 14837008  T
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14837007 attctaatttcttcaattttgaggcactttcacaaca 14836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 34980012 - 34980136
Alignment:
Q  11 ccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 110  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||| ||||||| | | |||||| |||||| |||||||||||  ||||||| |||||    
T  34980012 ccgatttttgccaaacctaaagctcaaataaagcaggtcaaaatcggccaccgtgtcctaaaaatcggccaccgattttcagcttctagaattctaattt 34980111  T
Q  111 cttcaattttgaggcactttcacaa 135  Q
    |||||||||||||||| ||||||||    
T  34980112 cttcaattttgaggcattttcacaa 34980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 15539947 - 15540038
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaatt 140  Q
    ||||||||| ||||| |||||||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15539947 caaaatcggccaccgagccttgaaaatcggccatcgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaacaatt 15540038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 11740009 - 11740078
Alignment:
Q  68 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11740009 ttgaaaatcggccaccgattttcaactttcagaattccaatttcttcaattttgaggcactttcacaaca 11740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 22163419 - 22163485
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22163419 aaaatcggccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 22163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 3021917 - 3021839
Alignment:
Q  59 caccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||| ||| |||||||| |||||  |||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  3021917 caccgagccctgaaaatcggccacggatttcctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 3021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 38019915 - 38019884
Alignment:
Q  106 aatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||||||||||||||||||||||||||    
T  38019915 aatttcttcaattttgaggcactttcacaaca 38019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 24748482 - 24748341
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  24748482 aaattggccaccgatctttgccgaacctgaagctcaaataaaacaggtcaaaatcggtcaccgtgccctgaaaatcagccaccgattttcagcttccaga 24748383  T
Q  101 attccaatttcttcaattttgaggcactttcacaacaattat 142  Q
    |||| ||||| |||||||||||| ||||||||||||| ||||    
T  24748382 attctaattttttcaattttgagtcactttcacaacatttat 24748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 21677932 - 21677796
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| || |||||| | ||| ||||| |||||||| |||||| ||||||||||| |||     
T  21677932 aaattggccaccgatttttgccgaacctgaagctcaaataaaacaggttaaaatcagccactgtgccctgaaaatcggccaccgattttcagcttccagg 21677833  T
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  21677832 attccaatttcttcaattttgaggcactttcacaaca 21677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 21679893 - 21679759
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||| |||| |||| |  ||||| |||||| || |||||||| ||||    
T  21679893 aaatcggccaccaattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccatgccctacaaatcggccaccgatgttcagcttccaga 21679794  T
Q  101 attccaatttcttcaattttgaggcactttcacaa 135  Q
    ||||||||||||| | |||||||||||||||||||    
T  21679793 attccaatttcttaatttttgaggcactttcacaa 21679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 27833125 - 27833194
Alignment:
Q  69 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 138  Q
    |||||||| |||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  27833125 tgaaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaacaa 27833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 44724399 - 44724329
Alignment:
Q  68 ttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 138  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||    
T  44724399 ttgaaaatcggccaccgattttcagcttccagaatttcaattttttcaattttgaggcacgttcacaacaa 44724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 39146389 - 39146524
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    ||||||||||||| |||||||| |||| | ||   ||| | |||| ||||||||||| |||||  || ||||||||  |||||  ||||| |||| || |    
T  39146389 aaatcggccaccgttttttgccaaaccaacagacaaaaaacaaca-gtcaaaatcggccaccgaaccctgaaaatcgaccaccggttttctgcttccaaa 39146487  T
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39146488 attccaatttcttcaattttgagtcactttcacaaca 39146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 22829105 - 22829171
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||| |||||  ||||||  ||| ||||||||||||||||||||||||||| |||||||||||||    
T  22829105 aaaatcggccactgattttctacttccagaattccaatttcttcaattttgagtcactttcacaaca 22829171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 11355042 - 11355005
Alignment:
Q  105 caatttcttcaattttgaggcactttcacaacaattat 142  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  11355042 caatttcttcaattttgagtcactttcacaacagttat 11355005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22490551 - 22490415
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||| | ||||||||||||||||    
T  22490551 aaatcagccaccgatttatgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcggccatcgattttcagctttcaga 22490452  T
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  22490451 attctaatttcttcaattttgaggcactttcataaca 22490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 10584010 - 10583884
Alignment:
Q  9 caccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaat 108  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||| ||| | ||| |||||||   |||||  |||||||||| ||||||||||||    
T  10584010 caccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccactgcgccctgaaaatggaccaccggttttcagcttccagaattccaat 10583911  T
Q  109 ttcttcaattttgaggcactttcacaa 135  Q
    |||||||||||| ||||||||||||||    
T  10583910 ttcttcaattttaaggcactttcacaa 10583884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 13057037 - 13056949
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||| ||||| ||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  13057037 caaaatcggccaccgagccctgaaaatcggccaccaattttctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 13056949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 3632406 - 3632494
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||| |||||||| ||||||||| | || | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3632406 caaaatcggccaccgtgctttgaaaatcgggcatcgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 3632494  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24338871 - 24338946
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatc 76  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  24338871 aaatcggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatc 24338946  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 24338941 - 24339028
Alignment:
Q  50 aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||||| | ||||||| |||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  24338941 aaaatcggcctccgtgccctgaaaatcggccaccgattttcatcttccagaatttcaatttcttcaattttgaggcactttcacaaca 24339028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 3630354 - 3630424
Alignment:
Q  69 tgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3630354 tgaaaatcggccaccgattttcagcttctagaattccaatttcttcaattttgaggcactttcacaacaat 3630424  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 13039597 - 13039509
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||| ||||| ||| |||||||| ||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  13039597 caaaatcggccaccgagccctgaaaatcggccaccggttttctgcttccagaatttcaatttcttcaattttgaggcactttcacaaca 13039509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 13870818 - 13870910
Alignment:
Q  46 tgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 138  Q
    |||||||||||| |||||  || ||||||||  ||||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||    
T  13870818 tgtcaaaatcggccaccgaaccctgaaaatcgaccaccgattttctgcttccaaaattccaatttcttcaattttaaggcactttcacaacaa 13870910  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 26944967 - 26944923
Alignment:
Q  96 tcagaattccaatttcttcaattttgaggcactttcacaacaatt 140  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  26944967 tcagaactccaatttcttcaattttgagtcactttcacaacaatt 26944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 12162024 - 12162060
Alignment:
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12162024 attccaatttctttaattttgaggcactttcacaaca 12162060  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12161977 - 12162019
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaa 43  Q
    |||| |||||||||||||||||||| || ||||||||||||||    
T  12161977 aaattggccaccgatttttgccgaatctgaagctcaaataaaa 12162019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 20219989 - 20219939
Alignment:
Q  60 accgtgccttgaaaatcagccaccaattttcagctttcagaattccaattt 110  Q
    |||||||| |||||||| |||||| ||||||||||| || |||||||||||    
T  20219989 accgtgccctgaaaatcggccaccgattttcagcttccataattccaattt 20219939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24126712 - 24126579
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    ||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||||   || || | ||||||||||||||||||  |||    
T  24126712 aaatcggccaccgatttttgccgaatctgaagctcaaacaaaacaggtcaaaatcggccaccgtgc---gacaaccggccaccaattttcagcttctaga 24126616  T
Q  101 attccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24126615 attccaatttcttcaattttgagacactttcacaaca 24126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2723823 - 2723698
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcaga 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||        ||| ||||||||||| ||||    
T  2723823 aaattggccaccgatttttgccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaa--------accgattttcagcttccaga 2723732  T
Q  101 attccaatttcttcaattttgaggcactttcaca 134  Q
    ||||||||||||||||||||||||||||||||||    
T  2723731 attccaatttcttcaattttgaggcactttcaca 2723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10474746 - 10474856
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaa-ttttcagctttcag 99  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||||| |||    
T  10474746 aaatcggccaccgattttttccgaacctgaagctcaaataaaacaggtcaaaatcggccaccgtgccctgaaaatcggccaccaatttttcagcttccag 10474845  T
Q  100 aattccaattt 110  Q
    |||||||||||    
T  10474846 aattccaattt 10474856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 17072739 - 17072619
Alignment:
Q  1 aaatcggccaccgattttt-gccgaacctaaagctcaaataaaacatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcag 99  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||| ||| || ||||||||||| |||||| ||||||||||||||     
T  17072739 aaatcggccaccgattttttgccgaacttgaagctcaaataaaacaggtcaaaatcggccactgtaccttgaaaatcggccaccgattttcagctttcaa 17072640  T
Q  100 aattccaatttcttcaatttt 120  Q
    |||||||||||||| ||||||    
T  17072639 aattccaatttctttaatttt 17072619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 695697 - 695631
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  695697 aaaatcggccaccaattttcagcttccagaatttcaatttcttcaattttgaggcactttcacaaca 695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 20044816 - 20044755
Alignment:
Q  78 gccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaat 139  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  20044816 gccaccgattttctgcttccagaattccaatttcttcaattttgagtcactttcacaacaat 20044755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 20042858 - 20042770
Alignment:
Q  49 caaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||| |||| ||||||||| |||||||| |||| ||||||||  ||| |||||||||||||||||||||||| |  |||||||||||||    
T  20042858 caaattcggccaccgtgccctgaaaatcggccatcaattttcttcttccagaattccaatttcttcaattttaaatcactttcacaaca 20042770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27107320 - 27107458
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaaacat-gtc-aaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttca 98  Q
    ||||||||||||||||||||||||||| || ||    ||||||||  ||| |||||||| |||| |||  |||||||| |||| | ||||||||||| ||    
T  27107320 aaatcggccaccgatttttgccgaaccaaaggcc---ataaaacagagtccaaaatcggccaccatgctctgaaaatcggccatcgattttcagcttcca 27107416  T
Q  99 gaattccaatttcttcaattttgaggcactttcacaacaatt 140  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  27107417 gaattctaatttcttcaattttgaggcactttcacaacaatt 27107458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 26775114 - 26774978
Alignment:
Q  1 aaatcggccaccgatttttgccgaacctaaagctcaaataaa-acatgtcaaaatcggtcaccgtgccttgaaaatcagccaccaattttcagctttcag 99  Q
    ||||||| |||||| ||||||||||| |||||  |||| ||| | ||  |||||||||||| |||||  |||||||| |||||| |||||| |||  |||    
T  26775114 aaatcgggcaccgacttttgccgaac-taaaggccaaaaaaacagattccaaaatcggtcaacgtgctctgaaaatcggccaccgattttctgctaccag 26775016  T
Q  100 aattccaatttcttcaattttgaggcactttcacaaca 137  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26775015 aattccaatttcttcaattttgaggcactttcacaaca 26774978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 33541860 - 33541927
Alignment:
Q  71 aaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaacaa 138  Q
    |||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33541860 aaaatcggccaccgattttcagcttccagaattccaatttctttaattttgaggcactttcacaacaa 33541927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 15186164 - 15186247
Alignment:
Q  54 tcggtcaccgtgccttgaaaatcagccaccaattttcagctttcagaattccaatttcttcaattttgaggcactttcacaaca 137  Q
    |||| ||||| ||| ||||||||  | ||| |||||  |||| || |||||| ||||||||||||||||| |||||||||||||    
T  15186164 tcggccaccgagccctgaaaatcgacgaccgattttttgcttccataattcctatttcttcaattttgagtcactttcacaaca 15186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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