View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14439_low_38 (Length: 287)
Name: NF14439_low_38
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 7316807 - 7316663
Alignment:
| Q |
127 |
ttgtttataccttagtcttgcatgttataaaaaccattgaggttgtaaagtagtgaattctgcagtcttggcagatgctgaagtctgagttttagaatac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7316807 |
ttgtttataccttagtcttgcatgttattaaaactattgaggttgtaaagtagtgaattctgcagtcttggcagatgctgaagtctgagttttagaatag |
7316708 |
T |
|
| Q |
227 |
aatacaagtatttctccattagcttctatatatcctcttgttgat |
271 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7316707 |
aatataagtatttctccattagcttctatatatcctcttgttgat |
7316663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 7219240 - 7219384
Alignment:
| Q |
127 |
ttgtttataccttagtcttgcatgttataaaaaccattgaggttgtaaagtagtgaattctgcagtcttggcagatgctgaagtctgagttttagaatac |
226 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7219240 |
ttgtttaaaccttagtcttgcatgttattaaaactattgaggttgtaaagtagtgaattctgcagtcttggcagatgctgaagtctgagttttagaatag |
7219339 |
T |
|
| Q |
227 |
aatacaagtatttctccattagcttctatatatcctcttgttgat |
271 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7219340 |
aatataagtatttcttcattagcttctatatatcctcttgttgat |
7219384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 7219104 - 7219159
Alignment:
| Q |
13 |
aatatgacaaaagaacaggttgctagccatttacaggttcgtttttgtattaattt |
68 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7219104 |
aatatgacaaaagaacaggttgccagccatttacaggttcgtttttgtattaattt |
7219159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 8163236 - 8163288
Alignment:
| Q |
219 |
tagaatacaatacaagtatttctccattagcttctatatatcctcttgttgat |
271 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8163236 |
tagaatagaatataagtatttctccattagcttctgtatatcctcttgttgat |
8163288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 7316908 - 7316851
Alignment:
| Q |
66 |
ttttgttgattctgtaaatttgatatattgtacctaagtc--tagtttcctaggtttg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
7316908 |
ttttgttgattctgtaaatttgatatattttacctaagtctatagttgcctaggtttg |
7316851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 16254418 - 16254355
Alignment:
| Q |
17 |
tgacaaaagaacaggttgctagccatttacaggttcgtttttgt--attaattttgttgattct |
78 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||||| | |||||||| ||||||||| |
|
|
| T |
16254418 |
tgacaaaagagcatattgctagccatttacaggtttgtttttttagattaatttggttgattct |
16254355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University