View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14439_low_39 (Length: 282)
Name: NF14439_low_39
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_39 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 43090555 - 43090291
Alignment:
| Q |
18 |
aaaattttatgttagaaagtatattgtcgacactcctcggtatctattctcaatctttatcgcattattcttatttgtatagctacaatcaatggatttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43090555 |
aaaattttatgttagaaagtatattgtcgacactcctcggtatctattctcaatctttatcgcattattcttgtttgtatagctacaatcaatggatttc |
43090456 |
T |
|
| Q |
118 |
tcttttgaagccaaattcagaatccttgaatgatgacacattttacgacctttcttgaaactatcatattgtaagttttgtagtattacgttgnnnnnnn |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090455 |
tcttttgcagccaaattcagaatccttgaatgatgacacattttacgacctttcttgaaactatcatattgtaagttttgtagtattacgttgttttttt |
43090356 |
T |
|
| Q |
218 |
natcgcacagtatatgtttcaaatctcatgtcatcaatttttattttcactcgataaaatattgc |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43090355 |
tatcgcacagtatatgattcaaatctcatgtcatcaattattattttcactcgataaaatattgc |
43090291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University