View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_4 (Length: 540)
Name: NF14439_low_4
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 128 - 526
Target Start/End: Complemental strand, 11401828 - 11401430
Alignment:
| Q |
128 |
ctcttgttattcaacaaactttgatttactttacaacggactacaagacaccctttatataggctagctttccttacataatgaataaacctaatcacta |
227 |
Q |
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| T |
11401828 |
ctcttgttattcaacacactttgatttactttacaacggactacaagacaccctttatataggctaggtttccttacataatgaataaacctaatcacta |
11401729 |
T |
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| Q |
228 |
agatataatgaagagacggttcagatattttaataaagatagtcttgcatgtaagcaagatacatgcttgatggctaagtttcttacaagtaaagataaa |
327 |
Q |
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| T |
11401728 |
agatataatgaagaggcgtttcagataatttaataaagatagtcttgcatgtaagcaagatacatgcttgatggctaagtttcttacaagtaaagataaa |
11401629 |
T |
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| Q |
328 |
acaaacggtgctccttatcttcaagtggtccagtagtatcatcatttcttaatggtgaagacttgtcttctagaatgcttctaaaatcttctagtttatg |
427 |
Q |
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| T |
11401628 |
acaaacggtgctccttatcttcaagtggtccagtagtatcatcatttcttaatggtgaagacttgtcttctggaatgcttctaaaatcttctagtttatg |
11401529 |
T |
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| Q |
428 |
cttgatttaattttcttacagttgtcatttgtcattgttgatattgtttgtgtgacctgtcttgacataatattttgcaattaactgaaatttcttttg |
526 |
Q |
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| T |
11401528 |
cttgatttaattttcttacggttgtcatttgtcattgtttatattgtttgtgtgacctgtcttgacataatattttaaaattaactgaaatttcttttg |
11401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 11401897 - 11401830
Alignment:
| Q |
19 |
tcaataactgaaatctaatttcgaaccgaacgatgttgtagttgttcatcataactctcttagaatat |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11401897 |
tcaataactgaaatctaatttcgaaccgaacgatgttgtagttgttcatcataactctcttagaatat |
11401830 |
T |
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