View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_41 (Length: 273)
Name: NF14439_low_41
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 13651360 - 13651617
Alignment:
| Q |
5 |
gctactaccaaatatcatcttatcttatcctatagatcacaaaattgagattgtagaaaaatggaaacaccgcatgtgttaatcttcccatgtccagcac |
104 |
Q |
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| T |
13651360 |
gctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgttgaaaaatggaaacaccgcatgtgttaatcttcccatgtccagcac |
13651459 |
T |
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| Q |
105 |
aaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgagtacatccacaacagactcat |
204 |
Q |
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| T |
13651460 |
aaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaatacatccacaacagactcat |
13651559 |
T |
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| Q |
205 |
taatttgaa---tgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
259 |
Q |
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| T |
13651560 |
tagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
13651617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 13646354 - 13646536
Alignment:
| Q |
77 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
176 |
Q |
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| T |
13646354 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctca |
13646453 |
T |
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| Q |
177 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
259 |
Q |
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| T |
13646454 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattc |
13646536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 13656680 - 13656862
Alignment:
| Q |
77 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
176 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | |||| || || || | |
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| T |
13656680 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcacttttctca |
13656779 |
T |
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| Q |
177 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
259 |
Q |
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| T |
13656780 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattc |
13656862 |
T |
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