View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_43 (Length: 268)
Name: NF14439_low_43
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3300216 - 3300417
Alignment:
| Q |
1 |
tttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacagcttcaccatactgcatgctgtaaaaatctgttatgcaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
3300216 |
tttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacagtttcaccatac----tgctgtaaaagtctgttatgcaga |
3300311 |
T |
|
| Q |
101 |
aaactgcattaatgtgtgatatttcacaacttgcaaagagtaatgctatatactatgacatattttgcttagaaatgtcatgagtgcacacttgttaaat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
3300312 |
aaactgcattaatgagtgatatttcacaacttgcaaagagtaatgc--tatactatgaaatattttgcttagaaatgtcgtgagtgcacacttgttaaat |
3300409 |
T |
|
| Q |
201 |
attgcagg |
208 |
Q |
| |
|
|||||||| |
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| T |
3300410 |
attgcagg |
3300417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3393109 - 3393310
Alignment:
| Q |
1 |
tttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacagcttcaccatactgcatgctgtaaaaatctgttatgcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
3393109 |
tttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacagtttcaccatac----tgctgtaaaagtctgttatgcaga |
3393204 |
T |
|
| Q |
101 |
aaactgcattaatgtgtgatatttcacaacttgcaaagagtaatgctatatactatgacatattttgcttagaaatgtcatgagtgcacacttgttaaat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
3393205 |
aaactgcattaatgagtgatatttcacaacttgcaaagagtaatgc--tatactatgaaatattttgcttagaaatgtcgtgagtgcacacttgttaaat |
3393302 |
T |
|
| Q |
201 |
attgcagg |
208 |
Q |
| |
|
|||||||| |
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| T |
3393303 |
attgcagg |
3393310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1162354 - 1162254
Alignment:
| Q |
1 |
tttcacttggaattagtagactagagtggcaccaaactgt--attaatgtgtgatatttacagcttcaccatactgcatgctgtaaaaatctgttatgca |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
1162354 |
tttcacttggaattagtagactaaagtggcaccaaactgtgtattaatgtgtgatatttacagcttcaccatac----tgctctaaaagtctgttatgca |
1162259 |
T |
|
| Q |
99 |
gaaaa |
103 |
Q |
| |
|
||||| |
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|
| T |
1162258 |
gaaaa |
1162254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 39880698 - 39880767
Alignment:
| Q |
2 |
ttcacttggaattagtagactagagtggca-ccaaactgtattaatgtgtgatatttacagcttcaccat |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || |||||| ||||||||||| || ||||||||| |
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|
| T |
39880698 |
ttcacttggaattagtagactagagtggcacccaagctatattaaagtgtgatatttgcatcttcaccat |
39880767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 40412787 - 40412856
Alignment:
| Q |
2 |
ttcacttggaattagtagactagagtggca-ccaaactgtattaatgtgtgatatttacagcttcaccat |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || |||||| ||||||||||| || ||||||||| |
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|
| T |
40412787 |
ttcacttggaattagtagactagagtggcacccaagctatattaaagtgtgatatttgcatcttcaccat |
40412856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40419709 - 40419810
Alignment:
| Q |
1 |
tttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgat----atttacagcttcaccatactgcatgctgtaaaaatctgttatg |
96 |
Q |
| |
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|||||||| |||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||| | |||||| ||| ||||||||| |
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| T |
40419709 |
tttcacttagaattagtag-ctagagtggc--caaactgtattaatctgtgatattaatttacagcttcaccatgc----tgctgtgaaagtctgttatg |
40419801 |
T |
|
| Q |
97 |
cagaaaact |
105 |
Q |
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||| ||||| |
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|
| T |
40419802 |
caggaaact |
40419810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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