View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_low_45 (Length: 251)

Name: NF14439_low_45
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_low_45
NF14439_low_45
[»] chr2 (4 HSPs)
chr2 (16-249)||(40734943-40735166)
chr2 (71-128)||(25209953-25210010)
chr2 (26-128)||(13954316-13954418)
chr2 (26-128)||(14095523-14095625)
[»] chr5 (1 HSPs)
chr5 (30-79)||(42717986-42718035)
[»] chr8 (1 HSPs)
chr8 (30-77)||(36132275-36132322)
[»] scaffold0294 (1 HSPs)
scaffold0294 (30-79)||(14456-14505)
[»] scaffold0027 (1 HSPs)
scaffold0027 (30-79)||(6149-6198)
[»] chr1 (2 HSPs)
chr1 (26-63)||(10778971-10779008)
chr1 (31-107)||(5703576-5703652)
[»] chr7 (1 HSPs)
chr7 (26-134)||(3773631-3773739)
[»] chr6 (1 HSPs)
chr6 (30-114)||(32052700-32052784)
[»] chr4 (1 HSPs)
chr4 (30-110)||(36918719-36918799)
[»] chr3 (1 HSPs)
chr3 (27-79)||(27252192-27252244)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 40734943 - 40735166
Alignment:
Q  16 atgaattagtttcgatttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaactcgtctt 115  Q
    ||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||      |     
T  40734943 atgaattagtttcgatttctcatccccattgaatatgggtaggataacagataaatatatgagagaatggtatgaggacgagaaaggtaaaa------tc 40735036  T
Q  116 ctccccaccccatcccatcccattgacatgtcaagtagtatgagcaacatttagagcagctaaagtgtacaaagtaaaacaaaacttccttttctctctc 215  Q
    |||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40735037 ctccccacccc----caccccattgacatgtcaagtagtatgagcaacatttagagcagctaaagtgtacaaagtaaaacaaaacttccttttctctctc 40735132  T
Q  216 tgacatttatgatgtttttgatatttggtgtttg 249  Q
    ||||||||||||||||||||||||||||||||||    
T  40735133 tgacatttatgatgtttttgatatttggtgtttg 40735166  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 25210010 - 25209953
Alignment:
Q  71 tatatgagagaatggtatgaggacgagaaaggtaaaactcgtcttctccccaccccat 128  Q
    ||||||| || | |||||||||||||| ||||||||||||||| || |||||||||||    
T  25210010 tatatgaaagtagggtatgaggacgaggaaggtaaaactcgtcctcaccccaccccat 25209953  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 13954418 - 13954316
Alignment:
Q  26 ttcgatttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaactcgtcttctccccaccc 125  Q
    |||||||||| ||||||| ||  ||||| || |||||| | ||| |||||||||| ||| |||| ||||||| |||||||||| | ||  | ||||||||    
T  13954418 ttcgatttcttatccccgctgggtatgggtaggataacgagtaagtatatgagagtatgatatggggacgaggaaggtaaaacccatccccaccccaccc 13954319  T
Q  126 cat 128  Q
    |||    
T  13954318 cat 13954316  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 14095625 - 14095523
Alignment:
Q  26 ttcgatttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaactcgtcttctccccaccc 125  Q
    |||||||||| ||||||| ||  ||||| || |||||| | ||| |||||||||| ||| |||| ||||||| |||||||||| | ||  | ||||||||    
T  14095625 ttcgatttcttatccccgctgggtatgggtaggataacgagtaagtatatgagagtatgatatggggacgaggaaggtaaaacccatccccaccccaccc 14095526  T
Q  126 cat 128  Q
    |||    
T  14095525 cat 14095523  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 42717986 - 42718035
Alignment:
Q  30 atttctcatccccgttgaatatggataagataacaaataaatatatgaga 79  Q
    |||||||||||||||||||||||| || | |||||| |||||||||||||    
T  42717986 atttctcatccccgttgaatatgggtagggtaacaagtaaatatatgaga 42718035  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 36132275 - 36132322
Alignment:
Q  30 atttctcatccccgttgaatatggataagataacaaataaatatatga 77  Q
    |||||||||||||||||||||||  ||||||||| ||||| |||||||    
T  36132275 atttctcatccccgttgaatatgtgtaagataacgaataagtatatga 36132322  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 14505 - 14456
Alignment:
Q  30 atttctcatccccgttgaatatggataagataacaaataaatatatgaga 79  Q
    |||||||||||||||||||||||| || | |||||| ||| |||||||||    
T  14505 atttctcatccccgttgaatatgggtagggtaacaagtaagtatatgaga 14456  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 6198 - 6149
Alignment:
Q  30 atttctcatccccgttgaatatggataagataacaaataaatatatgaga 79  Q
    ||||||||||||||||||||||| |||||  ||||| ||| |||||||||    
T  6198 atttctcatccccgttgaatatgtataagggaacaagtaattatatgaga 6149  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 10778971 - 10779008
Alignment:
Q  26 ttcgatttctcatccccgttgaatatggataagataac 63  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  10778971 ttcgatttctcatccccgttgaatatgggtaaggtaac 10779008  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 5703576 - 5703652
Alignment:
Q  31 tttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaa 107  Q
    |||||||||||||||| |||| | |||||||||   ||||||| |||||  | | ||||||||| ||||||||||||    
T  5703576 tttctcatccccgttggatataggtaagataacgtgtaaatatttgagattaggatatgaggacaagaaaggtaaaa 5703652  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 3773739 - 3773631
Alignment:
Q  26 ttcgatttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaactcgtcttctccccaccc 125  Q
    |||||||||||||||||  || |||||| |||| |||||  ||| |||||| ||| | | |||| ||||| |||||||||||| ||||  | || |||||    
T  3773739 ttcgatttctcatccccactggatatgggtaaggtaacaggtaagtatatgcgagtaggatatggggacgggaaaggtaaaacccgtccccacctcaccc 3773640  T
Q  126 catcccatc 134  Q
    ||| |||||    
T  3773639 cattccatc 3773631  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 32052784 - 32052700
Alignment:
Q  30 atttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaactcgtct 114  Q
    ||||||||||||||||| |||||| || | ||||   ||| |||||||||    |||||||||||| | ||||||||||||||||    
T  32052784 atttctcatccccgttggatatgggtagggtaacgggtaagtatatgagaatcgggtatgaggacggggaaggtaaaactcgtct 32052700  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 36918799 - 36918719
Alignment:
Q  30 atttctcatccccgttgaatatggataagataacaaataaatatatgagagaatggtatgaggacgagaaaggtaaaactc 110  Q
    |||||||||||||| || ||||||| | | |||||  ||| |||||||||| | |||||| ||||| | ||||||||||||    
T  36918799 atttctcatccccgctggatatggacagggtaacaggtaagtatatgagagtagggtatggggacggggaaggtaaaactc 36918719  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 27252244 - 27252192
Alignment:
Q  27 tcgatttctcatccccgttgaatatggataagataacaaataaatatatgaga 79  Q
    ||||||||||||||||||||  ||||| || | |||||||||| |||||||||    
T  27252244 tcgatttctcatccccgttgggtatgggtagggtaacaaataagtatatgaga 27252192  T

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