View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_49 (Length: 215)
Name: NF14439_low_49
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5958820 - 5958998
Alignment:
| Q |
20 |
taattcaggtacagtttcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagcggggtcgtg |
119 |
Q |
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| T |
5958820 |
taattcaggcacagtttcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagcggggtcgtg |
5958919 |
T |
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| Q |
120 |
tcactttttgaaaattgattttcttgatttactgggttaagatgaagagctacactgtctattgaccatgtatcttcat |
198 |
Q |
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| T |
5958920 |
tcactttttgaaaattgattttcttgatttagtgggttaagatgaagagctacactgtctattgaccatgtatcttcat |
5958998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 5947752 - 5947911
Alignment:
| Q |
20 |
taattcaggtacagtttcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagcggggtcgtg |
119 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
5947752 |
taattcaggcacagtagcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatttgttaagtggggtcgta |
5947851 |
T |
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| Q |
120 |
tcactttttgaaaattgattttcttgatttactgggttaagatgaagagctacactgtct |
179 |
Q |
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| T |
5947852 |
tcactttttaaaaattgattttcttgattaactgggttgagatgaagggctacaccgtct |
5947911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 5983362 - 5983481
Alignment:
| Q |
20 |
taattcaggtacagtttcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagcggggtcgtg |
119 |
Q |
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||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5983362 |
taattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagtggggtcgta |
5983461 |
T |
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| Q |
120 |
tcactttttgaaaattgatt |
139 |
Q |
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|||||||||||| ||||||| |
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| T |
5983462 |
tcactttttgaatattgatt |
5983481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 5920176 - 5920286
Alignment:
| Q |
39 |
tcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagcggggtcgtgtcactttttgaaaattgat |
138 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||| |||||| || ||||| || ||||||||||| | ||||| |
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| T |
5920176 |
tcaagttcaaccaaatcatgacattgaacatattgttccattaattcaattgggttgattattttgttgagtggggtggtatcactttttgagatttgat |
5920275 |
T |
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| Q |
139 |
tttcttgattt |
149 |
Q |
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||||||||||| |
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| T |
5920276 |
tttcttgattt |
5920286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 83
Target Start/End: Original strand, 5886436 - 5886466
Alignment:
| Q |
53 |
atcatgatattgatcatattgttgcattaat |
83 |
Q |
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| T |
5886436 |
atcatgatattgatcatattgttgcattaat |
5886466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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