View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_5 (Length: 539)
Name: NF14439_low_5
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Original strand, 12617445 - 12617957
Alignment:
| Q |
9 |
agtagcaaaggacatgtatgtatagctagtgcctagtattatcgaatccactaaaacatttataggaaaaattattttgagagagtttaattactctac- |
107 |
Q |
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| T |
12617445 |
agtatcaaaggacatgtatgtatagctagtgcctagtattatcgaatccactaaaacatttataggaaaaattattttgagagagtttaattactctaca |
12617544 |
T |
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| Q |
108 |
--ggtggtgtaaaattattttacacatatatctaacgatgtattgctattttaattaataaatattttataatcagaatcaatcagatgatcaaacatga |
205 |
Q |
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| T |
12617545 |
ttggtggtgtaaaattattttacacatgtatctaatgatgtattgctattttaattaataaatattttataatcagaaccaatcagatgatcaaacatga |
12617644 |
T |
|
| Q |
206 |
cagagttattannnnnnnnnnnnnnnnnnaaaattgaacagacatttaagagttcctaattaaacgccaaaatacnnnnnnnnngagtaataacgccaaa |
305 |
Q |
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| T |
12617645 |
cagaattattactttattttttattttt-aaaattgaacagacatttaagagttcctaattaaacgccaaaatactttttttttgagtaataacgc-aaa |
12617742 |
T |
|
| Q |
306 |
atactttatttaaagcatttaaaaagattaacatgttttgaaccggatctaagctcattccttagatggacttagcaatagaggtgcacgttaaggggtt |
405 |
Q |
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| T |
12617743 |
atactttatttaaagcatttaaaaagattaacatgttttgaaccggatctaagctcattccttagatggacttagcgatagaggtgcacgttaaggggtt |
12617842 |
T |
|
| Q |
406 |
gcatccaccaacacactcgagcgaatttgcctagctcatcagtgccgcttgatcaaaattggacgattattcacaaacaatgtcaggaatcccacaacgg |
505 |
Q |
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| T |
12617843 |
gcatccaccaacacactcgagcgaatttgcctaactcatcagtgccgcttgatcaaaattggacgattattcacaaacaatgtcaggaatcccacaacgg |
12617942 |
T |
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| Q |
506 |
atttaacagactcac |
520 |
Q |
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| T |
12617943 |
atttaacagtctcac |
12617957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 26515000 - 26514959
Alignment:
| Q |
112 |
gtgtaaaattattttacacatatatctaacgatgtattgcta |
153 |
Q |
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| T |
26515000 |
gtgtataattattttacacatatatctgacgatatattgcta |
26514959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 34820211 - 34820175
Alignment:
| Q |
114 |
gtaaaattattttacacatatatctaacgatgtattg |
150 |
Q |
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| T |
34820211 |
gtaaaattattctacacatatatctaatgatgtattg |
34820175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 31580901 - 31580941
Alignment:
| Q |
111 |
ggtgtaaaattattttacacatatatctaacgatgtattgc |
151 |
Q |
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| T |
31580901 |
ggtgtacaattattttacacatatatctaatgatgtgttgc |
31580941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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