View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_6 (Length: 533)
Name: NF14439_low_6
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 47368615 - 47368112
Alignment:
| Q |
12 |
tattctctgttcccaattgaaatatgtattggttataaaagaatctaccaatctccacagactcaatagttccaaaccaataataaataccagctatccc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368615 |
tattctctgttcccaattgaaatatgtattggttataaaagaatctaccaatctccacagactcaatagttccaaaccaataataaataccagctatccc |
47368516 |
T |
|
| Q |
112 |
tgcaattctaaagcaaattcaaaaagaagccaaaactacaactctcatactggagctaaaagatgaatatgctgattttcaagtgtcttcagatggcttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47368515 |
tgcaattctaaagcaaattcaaaaagaagccaaaactacaactctcatactggagctaaaagatgaacatgctgattttcaagtgtcttcagatggcttt |
47368416 |
T |
|
| Q |
212 |
gctgctagttttgtctagcagattcaccgtagcagaaaagaaaacacagcatcttaaaaggacatacataattcacatggacaagttcaacatgccagca |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368415 |
gctgctagttttgtctagcagattcaccatagcagaaaagaaaacacaacatcttaaaaggacatacataattcacatggacaagttcaacatgccagca |
47368316 |
T |
|
| Q |
312 |
agtttcgacgatcatctccaatggtatgattcatcactaaaatcagtatcagacactgcagagacgatgtatacctacaaacatgtagctcatggcttct |
411 |
Q |
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| T |
47368315 |
agtttcgacgatcatctccaatggtatgattcatcactaaaatcagtatcagacactgcagagacgatgtatacctacaaacatgtagctcatggcttct |
47368216 |
T |
|
| Q |
412 |
ccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtcagatacgagcttcacacaactcgaac |
511 |
Q |
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| T |
47368215 |
ccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtcagatacgagcttcacacaactcgaac |
47368116 |
T |
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| Q |
512 |
acca |
515 |
Q |
| |
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|||| |
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| T |
47368115 |
acca |
47368112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 515
Target Start/End: Original strand, 5374220 - 5374462
Alignment:
| Q |
273 |
acatacataattcacatggacaagttcaacatgccagcaagtttcgacgatcatctccaatggtatgattcatcactaaaatcagtatcagacactgcag |
372 |
Q |
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||||||||||||||||||||||| | || |||||||| || ||| ||||| || | |||| ||| |||| ||||||||||||||||| || |||| |
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| T |
5374220 |
acatacataattcacatggacaaatccaccatgccagaaacattcactgatcaccttaactggttcgatacatcgctaaaatcagtatcagaaacagcag |
5374319 |
T |
|
| Q |
373 |
agacgatgtatacctacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggt |
472 |
Q |
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||| | || || |||||||| |||||||||| | ||||||||| ||||||| |||||||| || ||| |||| || || ||||||||| || |
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| T |
5374320 |
agattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgt |
5374419 |
T |
|
| Q |
473 |
tatccctgatgtcagatacgagcttcacacaactcgaacacca |
515 |
Q |
| |
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||| ||||| |||||||| | ||||||||||| |||||||| |
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| T |
5374420 |
tatacctgaactcagataccaacttcacacaacaagaacacca |
5374462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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