View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_7 (Length: 524)
Name: NF14439_low_7
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 13 - 515
Target Start/End: Original strand, 27721988 - 27722491
Alignment:
| Q |
13 |
agcaaagggtctaggactaggctctatgcattgtgttctttttctatcatgggctctgcttgtttggttcaccagtattattgttcacaagaacatcgcc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27721988 |
agcaaagggtctaggactaggctctatgcattgtgttctttttctatcatgggctctgcttgtttggttcaccagtattattgttcacaagaacatcgcc |
27722087 |
T |
|
| Q |
113 |
aatggtggaaaggctttcgcaaccatgctcaatgtggtgatttctggcctgtaagcctttgttttcactgttttgaatggatattgtttatacggtgtaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27722088 |
aatggtggaaaggctttcgcaaccatgctcaatgtggtgatttctggcctgtaagcctttgttttcacggttttgaatggatattgtttatacggtgtaa |
27722187 |
T |
|
| Q |
213 |
catttcagttgttaacgtatcatttttct-aaattatgatgaatgatcttgcttctcacttctcaagtcactttggcaggcagcaccagacgtttcggcc |
311 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
27722188 |
catttcagttgttaacgtatcatttttctaaaattatgatgaatgatcttgcttctcacttatcaggtcacttgggcaggcagcaccagacgtttcggcc |
27722287 |
T |
|
| Q |
312 |
tttatcagagcaaagacagcagcttatcccatttttgagatgatagaaagagacatagttagcaaaaatagctcaaaagatgatcgaaaattnnnnnnnn |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27722288 |
tttatcagagcaaagacagcagcttatcccatttttgagatgatagaaagagacatagttagcaaaaatagctcaaaaaatgatcgaaaattaaaaaaaa |
27722387 |
T |
|
| Q |
412 |
tagacggtcacatacaatttactaatgtctgtttcagttacccatctcgccctgatgttgttattttcaacaatttctgtcttgagattccttcaggtaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27722388 |
tagacggtcacatacaatttactaatgtctgtttcagttacccatctcgccctgatgttgttattttcaacaatttctgtcttgagattccttcaggtaa |
27722487 |
T |
|
| Q |
512 |
agtt |
515 |
Q |
| |
|
|||| |
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|
| T |
27722488 |
agtt |
27722491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 27710915 - 27711092
Alignment:
| Q |
13 |
agcaaagggtctaggactaggctctatgcattgtgttctttttctatcatgggctctgcttgtttggttcaccagtattattgttcacaagaacatcgcc |
112 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||| |||||||| ||||||| ||| ||||||| ||||||| |||||||||| |||||| ||||| |
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| T |
27710915 |
agcaaagggtctaagactaggatctatgcaccgtgtcctttttctctcatgggatctccttgtttcgttcaccgtcattattgttctcaagaatgtcgcc |
27711014 |
T |
|
| Q |
113 |
aatggtggaaaggctttcgcaaccatgctcaatg-tggtgatttctggcctgtaagcctttgttttcactgttttgaa |
189 |
Q |
| |
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|||| ||| |||| || | ||||||||||||| | | || || || |||||||||| |||||||| ||||||||| |
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| T |
27711015 |
aatgacggagtggctctcactaccatgctcaatgttagctatctccggtctgtaagcctctgttttcattgttttgaa |
27711092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 12518877 - 12519031
Alignment:
| Q |
13 |
agcaaagggtctaggactaggctctatgcattgtgttctttttctatcatgggctctgcttgtttggttcaccagtattattgttcacaagaacatcgcc |
112 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||| |||||||| |||||| | |||||||||| ||| ||| || |||||||||||||||| ||| |
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| T |
12518877 |
agcaaagggtcttggacttggctcaatgcattgtgttctgtttctatcttgggctttacttgtttggtacactagtgttgttgttcacaagaacattgcc |
12518976 |
T |
|
| Q |
113 |
aatggtggaaaggctttcgcaaccatgctcaatgtggtgatttctggcctgtaag |
167 |
Q |
| |
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|||||||| || | ||| | ||||||||||| || || || ||||||||||||| |
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| T |
12518977 |
aatggtggcgagtcattcactaccatgctcaacgtcgtcatctctggcctgtaag |
12519031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 403
Target Start/End: Original strand, 12519213 - 12519338
Alignment:
| Q |
278 |
gtcactttggcaggcagcaccagacgtttcggcctttatcagagcaaagacagcagcttatcccatttttgagatgatagaaagagacatagttagcaaa |
377 |
Q |
| |
|
||||||| |||||||||||||||| | ||||| |||||| |||||||| ||||||||||||||||||||||||||||||| || || | ||| |||||| |
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| T |
12519213 |
gtcacttgggcaggcagcaccagatatctcggcatttatccgagcaaaggcagcagcttatcccatttttgagatgatagagagggatacagtgagcaaa |
12519312 |
T |
|
| Q |
378 |
aatagctcaaaagatgatcgaaaatt |
403 |
Q |
| |
|
|| ||||||||| || ||||||||| |
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| T |
12519313 |
aaaagctcaaaaactggtcgaaaatt |
12519338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 46583909 - 46583958
Alignment:
| Q |
15 |
caaagggtctaggactaggctctatgcattgtgttctttttctatcatgg |
64 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
46583909 |
caaagggtctagaactaggctctatgcattgtgttcattttctatcatgg |
46583958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 46584514 - 46584563
Alignment:
| Q |
15 |
caaagggtctaggactaggctctatgcattgtgttctttttctatcatgg |
64 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||||||| ||||| |
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| T |
46584514 |
caaagggtctaagattaggctctatgcatcgtgttctttttctaccatgg |
46584563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 46584571 - 46584608
Alignment:
| Q |
164 |
taagcctttgttttcactgttttgaatggatattgttt |
201 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| |
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| T |
46584571 |
taagactttgttttcactgttttgaatgaatattgttt |
46584608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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