View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1443_low_1 (Length: 576)
Name: NF1443_low_1
Description: NF1443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1443_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Original strand, 46712179 - 46712736
Alignment:
| Q |
14 |
gattattcttaattagaaatgctcctggtgttcctatatca---tcatcatccaaatcaaatgtaaccttgtatgttgattcaccagctattaagggtgt |
110 |
Q |
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| T |
46712179 |
gattattcttaattaggaatgctcctggtgttcctatatcatcatcatcatccaaatcaaatgtaaccttgtatgttgattcaccagctattaagggtgt |
46712278 |
T |
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| Q |
111 |
gattgtgctattccagtcttctagatatgcaggcttcccaacttttcctttcatgccattgccttcaaaatttatcatcataagcttaaaacatcattca |
210 |
Q |
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| T |
46712279 |
gattgtgctattccagtcttctagatatgcaggcttcccaacttttcctttcatgccattgccttcaaaatttatcatcataagcttaaaacatcattca |
46712378 |
T |
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| Q |
211 |
aagatacttttcttcgtaactattatatttatattaannnnnnnaagggttatattaaatttaattaacagtatagaaaaattaagtttggtaaattaaa |
310 |
Q |
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| T |
46712379 |
aagatagttttcttggtaactattatatttatattaatttttttaagggttatattaaatttaattaacagtatagaaaaattaagtttggtaaattaaa |
46712478 |
T |
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| Q |
311 |
gttgta-----ttttannnnnnnnatatctaaagtgaactctttagtctgtgacttgtaagagaaactccttttacaaaaatgatattattattatgagc |
405 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46712479 |
gttgtattttttttttttttttttatatctaaagtgaactctttagtctgtgacttgtaagagaaactccttttacaaaaattatattattattatgagc |
46712578 |
T |
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| Q |
406 |
atatctaattccatcaaggtaataatttaatactcacataacccagaatttacataatattggtagttattttgctaattgataatgattactactacag |
505 |
Q |
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| T |
46712579 |
atatctaattccatcaaggtaataatttaatactcacataacccagaatttacataatattggtagttattttgctaaatgataatgattactactacag |
46712678 |
T |
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| Q |
506 |
ttaattccct---nnnnnnntgatttctacaattaatggttacaaaatatgtcatttt |
560 |
Q |
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| T |
46712679 |
ttaattccctaaaaaaaaaatgattactacaattaatggttacaaaatatgtcatttt |
46712736 |
T |
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