View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14441_high_1 (Length: 422)
Name: NF14441_high_1
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14441_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 49819300 - 49819702
Alignment:
| Q |
1 |
gacttgatggattaaaggtaggatgaaacaaatgaggtgccattacattactaatggagctaagtcgctccttcaaagacataattcaagaacgagactt |
100 |
Q |
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| T |
49819300 |
gacttgatggattaaaggtaggatgaaacaaatgaggtgccattacattactaatggagctaagtcgctccttcaaagacataattcaagaacgagactt |
49819399 |
T |
|
| Q |
101 |
gttgctaaaggctcaatgaaatgaaaatagtgcatcacgaacttcgggatcacacgggccaagaaagaccatgtagagaaatttgtactgtaacaattag |
200 |
Q |
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| T |
49819400 |
gttgctaaaggctcaatgaaatgaaaatagtgcatcacgaacttcgggatcacacgagccaagaaagaccatgaagagaaatttgtactgtaacaattag |
49819499 |
T |
|
| Q |
201 |
aagtttctttatcctttcatgacatggtcaacaagatggcgagcaacaagaagatagtggatctgttttgacgtaccaaacaaaatagttgatagagtta |
300 |
Q |
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| T |
49819500 |
aagtttctttatcctttcatgacatggtcaacaagatgtcgagcaacaagaagatagtggatctgttttgacgtaccaaacaaaatagttgatagagtta |
49819599 |
T |
|
| Q |
301 |
agattgataggtagttgagtggtgactttttactctatgagatgtttttgtgctgaagaggttggatcgttgtaagatgtggtttgatcaaccatggtgg |
400 |
Q |
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| T |
49819600 |
agattgataggtagttgagtggtgactttttactctatgagatgtttttgtgctgaagaggttggatcgttgtaagatgtggtttgatcaaccatggtgg |
49819699 |
T |
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| Q |
401 |
att |
403 |
Q |
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| T |
49819700 |
att |
49819702 |
T |
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