View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14441_high_4 (Length: 350)

Name: NF14441_high_4
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14441_high_4
NF14441_high_4
[»] chr8 (8 HSPs)
chr8 (33-326)||(2123770-2124055)
chr8 (240-319)||(41947447-41947526)
chr8 (240-319)||(200130-200209)
chr8 (240-319)||(314967-315046)
chr8 (240-319)||(30408249-30408328)
chr8 (240-319)||(43809929-43810008)
chr8 (4-41)||(2123727-2123764)
chr8 (240-319)||(1288957-1289036)
[»] chr7 (3 HSPs)
chr7 (240-319)||(30429314-30429393)
chr7 (240-319)||(27759029-27759108)
chr7 (240-319)||(7942529-7942608)
[»] chr3 (3 HSPs)
chr3 (240-319)||(43551924-43552003)
chr3 (240-319)||(9699711-9699790)
chr3 (240-319)||(54169790-54169869)
[»] chr6 (5 HSPs)
chr6 (240-319)||(17889074-17889153)
chr6 (240-319)||(8317950-8318029)
chr6 (240-319)||(27570177-27570256)
chr6 (240-319)||(17161727-17161806)
chr6 (245-319)||(31927081-31927155)
[»] chr4 (4 HSPs)
chr4 (240-319)||(31356794-31356873)
chr4 (240-319)||(50630377-50630456)
chr4 (240-317)||(27188269-27188346)
chr4 (240-319)||(44149190-44149269)
[»] scaffold0044 (1 HSPs)
scaffold0044 (240-319)||(47311-47390)
[»] chr5 (6 HSPs)
chr5 (240-319)||(12020921-12021000)
chr5 (240-319)||(37679668-37679747)
chr5 (240-319)||(40369694-40369773)
chr5 (240-319)||(7101820-7101899)
chr5 (240-319)||(16796301-16796380)
chr5 (240-319)||(30697428-30697507)
[»] chr2 (3 HSPs)
chr2 (240-319)||(35952878-35952957)
chr2 (240-319)||(8053024-8053103)
chr2 (240-319)||(36672683-36672762)
[»] chr1 (2 HSPs)
chr1 (240-319)||(26313645-26313724)
chr1 (240-319)||(39796027-39796106)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 33 - 326
Target Start/End: Original strand, 2123770 - 2124055
Alignment:
Q  33 ttatgaaaacataataatattctaagagttaaaattccttnnnnnnngagttaattaaaatgacaatagtcgaatgaaacaaataaacttatcacacaca 132  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2123770 ttatgaaaacataataatattctaagagttaaaattccttaaaaaaagagttaattaaaatgacaatagtcgaatgaaacaaataaacttatcacacaca 2123869  T
Q  133 tacacnnnnnnnncaccattagagcctagaatccatcaacgtaacctactccacatttttatttgtttgggtgaaacaattcatttataaagaaatgtta 232  Q
    |||||        |||||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2123870 tacacaaaaaa--caccattagagcctagaatccatcaac-----ctactccacatttttattt-tttgggtgaaacaattcatttataaagaaatgtta 2123961  T
Q  233 acgaaatcaaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaaaaacggc 326  Q
    |||||   |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  2123962 acgaagcaaaacgtgaagcagttgatatattccagaagtttaaaattttagtggaaaagtaaagtggtaaatccattaaggttttaagaacggc 2124055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 41947447 - 41947526
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| ||||| |||||||||| ||   |||||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  41947447 caaaagtgaaacatttgatatgttctagaagtttaaaattttaatggaaaagcaaagtggtaaatccattaagattttaa 41947526  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 200209 - 200130
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  200209 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 200130  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 315046 - 314967
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  315046 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 314967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 30408328 - 30408249
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  30408328 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 30408249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 43810008 - 43809929
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  43810008 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 43809929  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 2123727 - 2123764
Alignment:
Q  4 ttgtctcttttttacttgtcaagtggtacttatgaaaa 41  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2123727 ttgtctcttttttacttgtcaagtggtacttatgaaaa 2123764  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 1288957 - 1289036
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| ||   |||||||||||| |||||||||||| ||||  |||||| |||||| |||||||    
T  1288957 caaaagtgaagcatttgatatgttctagaagtttaaaatcttagtggaaaagcaaaggcgtaaatccattaatattttaa 1289036  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 30429314 - 30429393
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| |||| |||||||||||| |||||||||||  |||||||||||| ||||||||||||||    
T  30429314 caaaagtgaagcatttgatatgtttcagaagtttaaaatcttagtggaaaaacaaagtggtaaatccattaagattttaa 30429393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 27759029 - 27759108
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  27759029 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagattttaa 27759108  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 7942608 - 7942529
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  7942608 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 7942529  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 43551924 - 43552003
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| |||| |||||||||||| |||||||||||  |||||||||||| ||||||||||||||    
T  43551924 caaaagtgaagcatttgatatgtttcagaagtttaaaatcttagtggaaaatcaaagtggtaaatccattaagattttaa 43552003  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 9699711 - 9699790
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||| ||||| |||||| ||||||||||||||    
T  9699711 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaagcaaagttgtaaatccattaagattttaa 9699790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 54169869 - 54169790
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  54169869 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 54169790  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 17889153 - 17889074
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| |||||||||||  |||||||||||| ||||||||||||||    
T  17889153 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagtggaaaaacaaagtggtaaatccattaagattttaa 17889074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 8318029 - 8317950
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  8318029 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 8317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 27570256 - 27570177
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||| ||||||    
T  27570256 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagtttttaa 27570177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 17161727 - 17161806
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| ||||||||||||| || |||| |||||||||||| ||||| |||||| ||||||| || |  |||||||||||||    
T  17161727 caaaagtgaagcatttgaaatgtttcagaagtttaaaatcttagttgaaaagcaaagtggaaagtctattaagattttaa 17161806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 31927155 - 31927081
Alignment:
Q  245 gtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||||||||||||||| |||| |||||| ||||| ||||| |||||| ||||||| ||||  |||||| ||||||    
T  31927155 gtgaagcatttgatatgtttcagaagttaaaaatcttagtagaaaagcaaagtggaaaatctattaaggttttaa 31927081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 31356794 - 31356873
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || |  |||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  31356794 caaaagtgaagcatttgatatgttccataagtttaatattttagtggaaaagcaaagtggtaaatccattaagattttaa 31356873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 50630456 - 50630377
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| |||||||||||  |||||||||||| ||||||||||||||    
T  50630456 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagtggaaaaacaaagtggtaaatccattaagattttaa 50630377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 27188269 - 27188346
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagatttt 317  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||| ||||| |||||| ||||||||||||    
T  27188269 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaagcaaagttgtaaatccattaagatttt 27188346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 44149190 - 44149269
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  44149190 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 44149269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 47390 - 47311
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  47390 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagattttaa 47311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 12020921 - 12021000
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  12020921 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagattttaa 12021000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 37679668 - 37679747
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  37679668 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagattttaa 37679747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 40369773 - 40369694
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  40369773 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagattttaa 40369694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 7101899 - 7101820
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  7101899 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 7101820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 16796301 - 16796380
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  16796301 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 16796380  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 30697428 - 30697507
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| ||   |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  30697428 caaaagtgaagcatttgatatgttctagaagtttaaaatcttagttgaaaaacaaagtggtaaatccattaagattttaa 30697507  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 35952957 - 35952878
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  |||||||||||| ||||||||||||||    
T  35952957 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaatcaaagtggtaaatccattaagattttaa 35952878  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 8053024 - 8053103
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  8053024 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 8053103  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 36672683 - 36672762
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || |  ||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  36672683 caaaagtgaagcatttgatatgttccaaaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 36672762  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 26313645 - 26313724
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  26313645 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 26313724  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 39796027 - 39796106
Alignment:
Q  240 caaacgtgaagcatttgatatatttcggaagtttaaaattttagtggaaaagtaaagtggtaaatacattaagattttaa 319  Q
    |||| |||||||||||||||| || | |||||||||||| ||||| |||||  | |||||||||| ||||||||||||||    
T  39796027 caaaagtgaagcatttgatatgttccagaagtttaaaatcttagttgaaaaacagagtggtaaatccattaagattttaa 39796106  T

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