View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14441_high_5 (Length: 335)
Name: NF14441_high_5
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14441_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 13975677 - 13975362
Alignment:
| Q |
1 |
agctttggaattttaaccctaacaacaactattctattcttttgtgcactctnnnnnnnnnttggacgtcatctttaaataataagataatgatgctacc |
100 |
Q |
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| T |
13975677 |
agcttttgaattttaaccctaacaacaactattctattcttttgtgcactctaaaaaaaa-ttggacgtcatctttaaataataagataatgatgcaacc |
13975579 |
T |
|
| Q |
101 |
ttgcatggaccatcatagagaacttttgatcatataaacttgacaaatacttgcaacactcatttttgaacactctctttgacatattcannnnnnnatt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||| |
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| T |
13975578 |
ttgcatggaccatcatagagaatttttgatcatataaacttgacaaatacatgcaacactcatttttgaacactctctttaac--attcacttttttatt |
13975481 |
T |
|
| Q |
201 |
ggagggaatcgttaaatgtcccaccccattttgtgtgtgttctattttcaaactccaaagtatagactcataatgatttaaaccaacaagagataatacc |
300 |
Q |
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|||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13975480 |
ggagggaatcgttacatgtcccatcccattttatgtgggttctattttcaaactccaaagtatagactcataatgatttaaaccaacaagagataatacc |
13975381 |
T |
|
| Q |
301 |
cggatggtactgctaatta |
319 |
Q |
| |
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||||| ||||||||||||| |
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| T |
13975380 |
cggatcgtactgctaatta |
13975362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 10950186 - 10950223
Alignment:
| Q |
256 |
caaagtatagactcataatgatttaaaccaacaagaga |
293 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||| |
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| T |
10950186 |
caaagtatagactcataatgatttaaactaataagaga |
10950223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 41727537 - 41727567
Alignment:
| Q |
263 |
tagactcataatgatttaaaccaacaagaga |
293 |
Q |
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| T |
41727537 |
tagactcataatgatttaaaccaacaagaga |
41727567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 55452097 - 55452065
Alignment:
| Q |
254 |
tccaaagtatagactcataatgatttaaaccaa |
286 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
55452097 |
tccaaagtgtagactcataatgatttaaaccaa |
55452065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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