View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14441_high_8 (Length: 235)
Name: NF14441_high_8
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14441_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 9743854 - 9743685
Alignment:
| Q |
21 |
tggttgtgttactggacgaggtggttgtccagaaggagccagtgttggtggtttggcaggagtcgtcttaggtggttgtgatgtggtaggagttggtggt |
120 |
Q |
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| T |
9743854 |
tggttgggttactggacgagttggttgtccagaaggagtcagagttggtgatttggcaggagtcgtcttaggtggttgtgatgtgataggagttggtggt |
9743755 |
T |
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| Q |
121 |
gttataggagttatcttaggtgacggtgtcattgcacgaggtggaggtgtgtgacgtagcttcggcggtg |
190 |
Q |
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| T |
9743754 |
gttataggagttatcttaggtgacggtgtcattgcacgaggtggaggtgtgtgaggtagcttcgacggtg |
9743685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 9743322 - 9743202
Alignment:
| Q |
64 |
gttggtggtttggcaggagtcgtcttaggtggttgtgatgtggtaggagttggtggtgttataggagttatcttaggtgacggtgtcattgcacgaggtg |
163 |
Q |
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| T |
9743322 |
gttggtggtttggcaagagtcgtcttaggtggttgtgatgtggtaggagtcggtggtgttataggagttatcttaggtggtgatgtcgttggacgaggtg |
9743223 |
T |
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| Q |
164 |
gaggtgtgtgacgtagcttcg |
184 |
Q |
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| T |
9743222 |
gttgtgtgggaggtagcttcg |
9743202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 9742851 - 9742751
Alignment:
| Q |
64 |
gttggtggtttggcaggagtcgtcttaggtggttgtgatgtggtaggagttggtggtgttataggagttatcttaggtgacggtgtcattgcacgaggtg |
163 |
Q |
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| T |
9742851 |
gttggtggtttggcaggagtcgtcttaggtggttgtgatttggtaggagtcggtggtgttataggagttatcttaggtggtgatgtcgttggacgaggtg |
9742752 |
T |
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| Q |
164 |
g |
164 |
Q |
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| T |
9742751 |
g |
9742751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 9742929 - 9742878
Alignment:
| Q |
7 |
ggaggattcctaggtggttgtgttactggacgaggtggttgtccagaaggag |
58 |
Q |
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| T |
9742929 |
ggaggattcctaggttgttgtgttactggacgaggtggttgtccagaaggag |
9742878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 9743400 - 9743349
Alignment:
| Q |
7 |
ggaggattcctaggtggttgtgttactggacgaggtggttgtccagaaggag |
58 |
Q |
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| T |
9743400 |
ggaggattcctaggttgttgtgttactggacgaggtggttgtccagaaggag |
9743349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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