View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14441_low_1 (Length: 595)

Name: NF14441_low_1
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14441_low_1
NF14441_low_1
[»] scaffold0117 (2 HSPs)
scaffold0117 (17-481)||(16500-16967)
scaffold0117 (480-578)||(17002-17100)
[»] chr6 (8 HSPs)
chr6 (17-133)||(888195-888309)
chr6 (355-458)||(21809817-21809920)
chr6 (355-453)||(4803159-4803258)
chr6 (374-458)||(17506263-17506349)
chr6 (495-575)||(1083565-1083642)
chr6 (495-575)||(1086211-1086288)
chr6 (378-444)||(10008206-10008272)
chr6 (372-439)||(18493261-18493328)
[»] chr3 (23 HSPs)
chr3 (355-468)||(44291241-44291354)
chr3 (355-458)||(15671128-15671231)
chr3 (366-458)||(43862940-43863032)
chr3 (366-440)||(42163629-42163703)
chr3 (366-459)||(32720543-32720636)
chr3 (352-455)||(17109542-17109646)
chr3 (355-450)||(35322016-35322109)
chr3 (366-458)||(27143998-27144090)
chr3 (366-434)||(44041347-44041415)
chr3 (355-458)||(49710944-49711046)
chr3 (366-439)||(36258695-36258769)
chr3 (355-453)||(43652480-43652578)
chr3 (488-566)||(51972126-51972202)
chr3 (366-431)||(49419074-49419139)
chr3 (366-458)||(43014644-43014738)
chr3 (370-446)||(55446744-55446819)
chr3 (370-444)||(4020111-4020185)
chr3 (495-556)||(11354648-11354710)
chr3 (366-408)||(23208167-23208209)
chr3 (370-444)||(50958873-50958947)
chr3 (377-444)||(26613098-26613166)
chr3 (352-444)||(48338826-48338918)
chr3 (372-444)||(54801358-54801430)
[»] chr7 (9 HSPs)
chr7 (355-467)||(45907045-45907157)
chr7 (366-440)||(22035749-22035823)
chr7 (355-439)||(41434719-41434803)
chr7 (355-453)||(16861681-16861779)
chr7 (354-458)||(36636017-36636122)
chr7 (355-467)||(8117455-8117567)
chr7 (358-453)||(21798802-21798896)
chr7 (488-566)||(4909540-4909615)
chr7 (372-436)||(31487738-31487802)
[»] chr8 (15 HSPs)
chr8 (355-458)||(39065545-39065648)
chr8 (355-453)||(39534149-39534247)
chr8 (358-458)||(41675685-41675785)
chr8 (378-439)||(20821908-20821969)
chr8 (370-458)||(28462570-28462657)
chr8 (381-453)||(29795509-29795581)
chr8 (488-566)||(41429350-41429425)
chr8 (370-446)||(41726907-41726983)
chr8 (356-439)||(14110626-14110708)
chr8 (366-439)||(900256-900329)
chr8 (389-453)||(30924836-30924900)
chr8 (352-458)||(39209371-39209476)
chr8 (353-431)||(34678216-34678294)
chr8 (355-436)||(13873718-13873799)
chr8 (378-439)||(37919417-37919478)
[»] chr5 (10 HSPs)
chr5 (352-458)||(21052636-21052742)
chr5 (355-458)||(7609551-7609654)
chr5 (355-458)||(14863335-14863438)
chr5 (370-458)||(2611175-2611263)
chr5 (358-458)||(12187182-12187282)
chr5 (366-458)||(11320125-11320216)
chr5 (370-444)||(8435070-8435144)
chr5 (370-459)||(35185254-35185342)
chr5 (375-436)||(1056830-1056891)
chr5 (366-458)||(31619318-31619408)
[»] chr4 (13 HSPs)
chr4 (355-468)||(31647710-31647823)
chr4 (355-459)||(19147159-19147263)
chr4 (366-439)||(38320141-38320214)
chr4 (488-562)||(24154276-24154347)
chr4 (355-459)||(47397603-47397707)
chr4 (17-139)||(48301287-48301407)
chr4 (378-444)||(54248994-54249060)
chr4 (366-437)||(31241974-31242045)
chr4 (352-432)||(16341110-16341190)
chr4 (356-412)||(20542607-20542663)
chr4 (370-436)||(27284093-27284159)
chr4 (370-458)||(16072340-16072429)
chr4 (378-458)||(3319284-3319364)
[»] chr1 (18 HSPs)
chr1 (357-468)||(50127361-50127472)
chr1 (355-458)||(31884471-31884574)
chr1 (366-458)||(40391240-40391332)
chr1 (366-458)||(44109093-44109184)
chr1 (488-566)||(11643809-11643884)
chr1 (355-458)||(30627626-30627730)
chr1 (355-434)||(48282902-48282981)
chr1 (355-439)||(19066878-19066962)
chr1 (355-439)||(19114768-19114852)
chr1 (370-458)||(26855853-26855940)
chr1 (366-432)||(33827847-33827913)
chr1 (366-432)||(33840052-33840118)
chr1 (370-444)||(13969125-13969199)
chr1 (17-95)||(38192371-38192449)
chr1 (374-439)||(15419681-15419746)
chr1 (393-458)||(27742552-27742617)
chr1 (366-439)||(50468829-50468902)
chr1 (392-444)||(33148179-33148231)
[»] chr2 (11 HSPs)
chr2 (357-459)||(37913017-37913119)
chr2 (366-458)||(21646500-21646591)
chr2 (490-575)||(37039096-37039178)
chr2 (374-458)||(19889744-19889828)
chr2 (355-459)||(23788417-23788520)
chr2 (405-468)||(11610471-11610534)
chr2 (394-459)||(23760642-23760707)
chr2 (366-458)||(4141639-4141730)
chr2 (530-566)||(7475247-7475283)
chr2 (370-446)||(13717189-13717264)
chr2 (377-456)||(17641174-17641254)
[»] scaffold0006 (1 HSPs)
scaffold0006 (355-436)||(38822-38903)
[»] scaffold0034 (1 HSPs)
scaffold0034 (374-458)||(22454-22538)
[»] scaffold0886 (1 HSPs)
scaffold0886 (352-436)||(1113-1197)
[»] scaffold1372 (2 HSPs)
scaffold1372 (355-403)||(1282-1330)
scaffold1372 (392-441)||(1330-1379)
[»] scaffold0068 (1 HSPs)
scaffold0068 (355-439)||(52030-52114)
[»] scaffold0079 (1 HSPs)
scaffold0079 (352-432)||(51671-51751)
[»] scaffold0078 (1 HSPs)
scaffold0078 (366-453)||(884-971)


Alignment Details
Target: scaffold0117 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 16500 - 16967
Alignment:
Q  17 gcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagttagt 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16500 gcataggattgtttggaatttgctgttagaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagttact 16599  T
Q  117 taagatagtcataacatgatttatattatggcagcttgaaaatcaaagtatacatcaagatatatattcacatacattaccatgtttacagttggaaagc 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16600 taagatagtcataacatgatttacattatggcagcttgaaaatcaaagtatacatcaagatatatattcacatacattaccatgtttacagttggaaagc 16699  T
Q  217 aaatataagtggtttattaagtttaccatcgtactaaagataaaccaatgcatgataatcttctttaattgatctcatggcagagtaat----nnnnnnn 312  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||               
T  16700 aaatataagtggtttattaagtttaccatcgtactaaacataaa-caatgcatgataatcttctttaattgatctcatggcagagtaataaaaataaaaa 16798  T
Q  313 nnnnnnntggagaatgttaaccaatgctccgggcaattgatttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataatt 412  Q
           | |||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  16799 taaaaaatagagaatgttaaccaataccccgggcaattgatctataaatagagtttctgtcttgaaaatataaactgtcactttttatcaagtaataatt 16898  T
Q  413 gcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccgggggtcctgttaaccag 481  Q
      |||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||  ||||||||||    
T  16899 atataattttttaataaaaacttatttcttttggtgcttaaccaatagcccaggggtattgttaaccag 16967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 480 - 578
Target Start/End: Original strand, 17002 - 17100
Alignment:
Q  480 agtgccccttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaattatc 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17002 agtgccccttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatacactaattatc 17100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 888309 - 888195
Alignment:
Q  17 gcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagttagt 116  Q
    |||| ||||||||| |||||||||||| |||||||||||||||| |||  ||| |||||||||||||||||||||||||||||||  ||||||| |||||    
T  888309 gcatgggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcac--agagaaaattagt 888212  T
Q  117 taagatagtcataacat 133  Q
    |||||||||| ||||||    
T  888211 taagatagtcgtaacat 888195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 21809817 - 21809920
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||  |||||| |||||||||| ||||||||||||||||||||||||| | | | ||||||||||||||||| ||  ||||| ||||||     
T  21809817 tataaatagaattgttgtcttagaaatataaattgtcactttttatcaagtaataattacgttactttttaataaaaacttattttatttagcgcttaac 21809916  T
Q  455 caat 458  Q
    ||||    
T  21809917 caat 21809920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 453
Target Start/End: Complemental strand, 4803258 - 4803159
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcacttttt-atcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    |||||||||| ||||||| || |||||||||| ||  ||||||| |||||||||||||| ||| | |||||| |||||| ||||||||||| ||||||||    
T  4803258 tataaatagaatttctgtgtttgaaatataaactgctacttttttatcaagtaataattacattactttttagtaaaaatttacttcttttggtgcttaa 4803159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 458
Target Start/End: Complemental strand, 17506349 - 17506263
Alignment:
Q  374 ttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaata--aaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||  |||| ||||||||||| |||| ||| ||||    
T  17506349 ttggaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaaaaattacttcttttggtgcctaaccaat 17506263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 1083642 - 1083565
Alignment:
Q  495 tttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaatt 575  Q
    ||||||| | |||| |||||||||||| ||||||   |||||||||||  |||||||||||||||||||||| | ||||||    
T  1083642 tttaccattgtatccctatttatgttgcatattt---ttctgcaatatttaataaatactctatgaaaacatccactaatt 1083565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 1086288 - 1086211
Alignment:
Q  495 tttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaatt 575  Q
    ||||||| | |||| |||||||||||| ||||||   |||||||||||  |||||||||||||||||||||| | ||||||    
T  1086288 tttaccattgtatccctatttatgttgcatattt---ttctgcaatatttaataaatactctatgaaaacatccactaatt 1086211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 10008272 - 10008206
Alignment:
Q  378 aaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    |||||||||  || |||||| |||||||||||||| ||  | |||||||||||||||||||||||||    
T  10008272 aaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttctttt 10008206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 18493328 - 18493261
Alignment:
Q  372 tcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||| ||||||||| ||| |||||| |||||||||| ||| || || ||||| ||||||||||||||    
T  18493328 tcttgaaaatataaaatgttacttttgatcaagtaattattacaaaacttttttataaaaacttactt 18493261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 355 - 468
Target Start/End: Original strand, 44291241 - 44291354
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||||| ||||||||     
T  44291241 tataaatagaatttctgtcttggaaatataaactgtcactttttattaagtaataattacattactttttaataaatacttacttcttttggtgcttaac 44291340  T
Q  455 caatagcccggggg 468  Q
    ||||  ||||||||    
T  44291341 caatgccccggggg 44291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 15671128 - 15671231
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||| | ||| |||||| |||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||| || |||||     
T  15671128 tataaataaaatttttgtcttcgaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttacttcatttggttcttaac 15671227  T
Q  455 caat 458  Q
    ||||    
T  15671228 caat 15671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 43863032 - 43862940
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||| ||| | |||||| ||||    
T  43863032 tttctgtcttggaaatataaactgtcactctttattaagtaataattacattactttttaataaaaacttacttcatttggggcttaaccaat 43862940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 366 - 440
Target Start/End: Original strand, 42163629 - 42163703
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttc 440  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||| ||| | |||||||||||||||||||||    
T  42163629 tttctgtcttggaaatataaaccgtcactttttattaagtaataattacattactttttaataaaaacttacttc 42163703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 459
Target Start/End: Original strand, 32720543 - 32720636
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaata 459  Q
    ||||| ||||| ||||||||| ||||||| ||||| |||||||||||  || ||||||||||||||||||||||  |||||||||||| |||||    
T  32720543 tttctttcttgaaaatataaactgtcactatttattaagtaataattatattattttttaataaaaacttacttaatttagtgcttaaccaata 32720636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 17109542 - 17109646
Alignment:
Q  352 atttataaatagagttt-ctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgct 450  Q
    ||||||||||||| ||| || ||||||||||||||| ||| || |||||| ||||||||||| ||||| ||||||||||||| ||||||  ||||||| |    
T  17109542 atttataaatagaattttctatcttggaaatataaactgtaacattttattaagtaataattacataactttttaataaaaatttactttatttagtgtt 17109641  T
Q  451 taatc 455  Q
    |||||    
T  17109642 taatc 17109646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 35322109 - 35322016
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgct 450  Q
    |||||||||| ||| |||||| |||||||||| | ||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||| |||||    
T  35322109 tataaatagaattt-tgtcttagaaatataaact-tcactttttattaagtaataattacattactttttaataaaaacttacttcttttggtgct 35322016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 27144090 - 27143998
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||| || |||||||||| ||| ||||||||| ||||||||||| ||| ||||||||||||||||||| ||| |||  ||||||| ||||    
T  27144090 tttctgtattagaaatataaactgtgactttttattaagtaataattacattattttttaataaaaacttagttcatttgttgcttaaccaat 27143998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 44041347 - 44041415
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaact 434  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||| ||| | ||||||||| |||||    
T  44041347 tttctgtcttggtaatataaactgtcactttttattaagtaataattacattactttttaatataaact 44041415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 49711046 - 49710944
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| |||||||||| |||||||||| ||| | ||||||| || ||||||||  || | ||||||||||||||||| ||  ||| |||||||||    
T  49711046 tataaatagaatttctgtcttagaaatataaaatgttattttttataaa-taataattatattaatttttaataaaaacttattttatttggtgcttaat 49710948  T
Q  455 caat 458  Q
    ||||    
T  49710947 caat 49710944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 36258769 - 36258695
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataa-ttttttaataaaaacttactt 439  Q
    |||||||||| |||||||||| ||||| ||||||| ||||||| ||| ||| | |||||||||||||||||||||    
T  36258769 tttctgtcttagaaatataaaatgtcattttttattaagtaatcattacattacttttttaataaaaacttactt 36258695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 355 - 453
Target Start/End: Original strand, 43652480 - 43652578
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    |||||||| | ||||| ||||||||||||||  ||||| |||||||||  |||||||| ||| | |||||| || ||||||||||| ||| ||||||||    
T  43652480 tataaataaaatttctatcttggaaatataatctgtcattttttatcagataataattacattactttttagtagaaacttacttcatttggtgcttaa 43652578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 566
Target Start/End: Complemental strand, 51972202 - 51972126
Alignment:
Q  488 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 566  Q
    |||||| | |||||||||||| ||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||    
T  51972202 ttatttctgtaccactatatccctatttatgttgtat-ttta-tttatgcaatatataataaatactctaggaaaacat 51972126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 49419074 - 49419139
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaa 431  Q
    ||||||| || |||||||||| ||||||||||||| || |||||||| ||||| ||||||||||||    
T  49419074 tttctgtattagaaatataaattgtcactttttattaactaataattacataactttttaataaaa 49419139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 43014738 - 43014644
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaata---attgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||||||||||| |||||||||| ||  |||||||   ||| ||| | ||||||| ||||||||||||  ||| |||||||||||||    
T  43014738 tttctgtcttggaaatataaattgtcactttt-atttagtaatagtaattacattactttttaacaaaaacttactttatttggtgcttaatcaat 43014644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 55446819 - 55446744
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttag 446  Q
    ||||||||||||||||  ||| |||||| || ||||||| ||| || || |||||| ||||||||||||||||||||    
T  55446819 tgtcttggaaatataagatgttacttttaataaagtaatgattacacaacttttta-taaaaacttacttcttttag 55446744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 4020185 - 4020111
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    ||||||| ||||||||| ||| | |||| || ||||||| ||| || |||||||| |||||||||||||| ||||    
T  4020185 tgtcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaaacttacttgtttt 4020111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 556
Target Start/End: Original strand, 11354648 - 11354710
Alignment:
Q  495 tttaccactatatctctatttatgttgtata-tttattttctgcaatataaaataaatactct 556  Q
    |||||||||||||| |||||||||||| ||| ||| |||| || |||||| ||||||||||||    
T  11354648 tttaccactatatccctatttatgttgcatatttttttttttgtaatatataataaatactct 11354710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 408
Target Start/End: Original strand, 23208167 - 23208209
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaat 408  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||    
T  23208167 tttctgtcttgaaaatataaactgtcactttttattaagtaat 23208209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 50958947 - 50958873
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    ||||||||||||||||  ||| | |||| |||||| ||| ||| || |||||||| |||||||||||||| ||||    
T  50958947 tgtcttggaaatataacatgttatttttgatcaagaaatgattacacaattttttcataaaaacttacttgtttt 50958873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 26613098 - 26613166
Alignment:
Q  377 gaaatataaagtgtcactttttatcaagtaataattgcataa-ttttttaataaaaacttacttctttt 444  Q
    |||||||||| ||| | |||| |||||||||||||| ||||| |||||| || ||||||||||| ||||    
T  26613098 gaaatataaaatgttatttttaatcaagtaataattacataactttttttatgaaaacttacttgtttt 26613166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 444
Target Start/End: Complemental strand, 48338918 - 48338826
Alignment:
Q  352 atttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    |||||||||||||  || | ||||||||||||||  ||| | |||| || ||||||| ||| || || ||||| |||||||||||||| ||||    
T  48338918 atttataaatagaaattttatcttggaaatataagatgttatttttgataaagtaattattacacaacttttttataaaaacttacttgtttt 48338826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 54801358 - 54801430
Alignment:
Q  372 tcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    ||||| ||||||||  ||| ||||||  | ||||||||||| || |||||||| |||||||||||||| ||||    
T  54801358 tcttgaaaatataagatgttacttttgctaaagtaataattacacaattttttcataaaaacttacttatttt 54801430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 355 - 467
Target Start/End: Original strand, 45907045 - 45907157
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||  |||||||     
T  45907045 tataaatagattttttgtcttgtaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttacttctttttatgcttaac 45907144  T
Q  455 caatagcccgggg 467  Q
    ||||| |||||||    
T  45907145 caatatcccgggg 45907157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 22035823 - 22035749
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttc 440  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  22035823 tttctgtcttggaaatataaactgtcactttttaataagtaataattacattattttttaataaaaacttacttc 22035749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 41434803 - 41434719
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    |||||||| | |||||||||| |||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||| ||||||    
T  41434803 tataaatataatttctgtcttagaaatataaactgtcactttttatcaaataataattacattattttttaataaaaatttactt 41434719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 453
Target Start/End: Complemental strand, 16861779 - 16861681
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    |||||||||| ||| ||||||||||||||||| ||||| ||||||| || || ||||| ||| | |||||||||||| |||| ||||||| ||||||||    
T  16861779 tataaatagaatttatgtcttggaaatataaactgtcattttttattaaatattaattacattactttttaataaaaccttatttcttttggtgcttaa 16861681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 354 - 458
Target Start/End: Original strand, 36636017 - 36636122
Alignment:
Q  354 ttataaatagagttt-ctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgctta 452  Q
    ||||||||||| ||| || ||||||| |||||||  ||||| |||||| ||||||||||| ||| ||||||||||||||||||||||  ||| |||||||    
T  36636017 ttataaatagaattttctatcttggagatataaacggtcaccttttattaagtaataattacattattttttaataaaaacttactttatttggtgctta 36636116  T
Q  453 atcaat 458  Q
    | ||||    
T  36636117 accaat 36636122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 467
Target Start/End: Original strand, 8117455 - 8117567
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||| ||||||| ||||||||| ||| | ||||||| || |||||||| ||| | ||||||||||||||||||||| ||||| | ||||     
T  8117455 tataaatagaatttatgtcttgaaaatataaattgttattttttattaaataataattacattactttttaataaaaacttacttcatttagcgtttaac 8117554  T
Q  455 caatagcccgggg 467  Q
    ||||  |||||||    
T  8117555 caatgccccgggg 8117567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 453
Target Start/End: Complemental strand, 21798896 - 21798802
Alignment:
Q  358 aaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    ||||||| ||| |||||||||| |||||| ||||| |||| || ||||||||||| ||| | || |||||||||| ||||||||||| ||||||||    
T  21798896 aaatagaatttatgtcttggaattataaactgtcatttttcattaagtaataattacattacttcttaataaaaa-ttacttcttttggtgcttaa 21798802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 4909540 - 4909615
Alignment:
Q  488 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 566  Q
    |||||| |||||||||||||| |||||||| ||| |||   ||||||||||||||| |||||||||||  |||||||||    
T  4909540 ttatttctttaccactatatccctatttattttgcata---attttctgcaatatataataaatactcactgaaaacat 4909615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 31487738 - 31487802
Alignment:
Q  372 tcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaactta 436  Q
    ||||||||||||||  ||| | ||||||| ||||||||||| || ||||||||  ||||||||||    
T  31487738 tcttggaaatataagatgttattttttattaagtaataattacacaattttttcttaaaaactta 31487802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 39065545 - 39065648
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||||||||||  ||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||     
T  39065545 tataaatagaatttctgtcttaaaaatataaactgtcactttttatcaagtaataatgacattattttttaataaaaatttacttcttttagtgcttaac 39065644  T
Q  455 caat 458  Q
    ||||    
T  39065645 caat 39065648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 453
Target Start/End: Original strand, 39534149 - 39534247
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    ||||| |||| ||||||||||| ||||||||| ||||||  ||||||||||||||||| ||| | ||||||||||||| |||| || ||| ||||||||    
T  39534149 tataattagaatttctgtcttgaaaatataaactgtcaccctttatcaagtaataattacattactttttaataaaaatttacctcatttggtgcttaa 39534247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 458
Target Start/End: Original strand, 41675685 - 41675785
Alignment:
Q  358 aaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaa 457  Q
    ||||||| ||||||| ||| ||||||||| | ||| |||||||||||||||||||  ||   ||||||||||||| ||||||||||| |||||||| |||    
T  41675685 aaatagaatttctgttttgaaaatataaactatcattttttatcaagtaataattatatttctttttaataaaaatttacttcttttggtgcttaaccaa 41675784  T
Q  458 t 458  Q
    |    
T  41675785 t 41675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 20821969 - 20821908
Alignment:
Q  378 aaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||    
T  20821969 aaatataaattgtcactttttattaagtaataattacattactttttaataaaaacttactt 20821908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 370 - 458
Target Start/End: Original strand, 28462570 - 28462657
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||||||| | ||||||||||| ||||||||||| ||| |  |||||||||||||||||||| ||| ||| |||| ||||    
T  28462570 tgtcttggaaatataaactatcactttttattaagtaataattacatta-cttttaataaaaacttacttcatttggtgtttaaccaat 28462657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 29795581 - 29795509
Alignment:
Q  381 tataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    |||||| |||||||||||||||| |||||||| ||| | ||||||| ||||||||| ||||||| ||||||||    
T  29795581 tataaactgtcactttttatcaattaataattacattactttttaacaaaaacttaattcttttggtgcttaa 29795509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 566
Target Start/End: Original strand, 41429350 - 41429425
Alignment:
Q  488 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 566  Q
    |||||| ||||||| |||||| |||||||||||| ||||||   |||| ||||||| ||||||||||||||||||||||    
T  41429350 ttatttctttaccattatatccctatttatgttgcatattt---ttctacaatatacaataaatactctatgaaaacat 41429425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 41726983 - 41726907
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttag 446  Q
    ||||||||||||||||| ||| | ||||||| ||||||| ||| |||| |||||| |||||||||||||| ||||||    
T  41726983 tgtcttggaaatataaaatgttattttttataaagtaatgattacatagttttttcataaaaacttacttattttag 41726907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 14110626 - 14110708
Alignment:
Q  356 ataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||||| | ||| |||||| ||||||||||  |||||||||||| ||||||||||| ||||| ||||||||||||| ||||||    
T  14110626 ataaatataatttttgtcttagaaatataaaccgtcactttttat-aagtaataattacataactttttaataaaaatttactt 14110708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 900256 - 900329
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||||||||| |||| |||| ||||| ||||||| |||||||||||  || | ||||||||||||||||||||    
T  900256 tttctgtcttgaaaatttaaactgtcattttttattaagtaataattatattactttttaataaaaacttactt 900329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 30924900 - 30924836
Alignment:
Q  389 gtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    ||||||||| |||||||||||||| ||| | ||| ||| ||||||||||||||||| ||||||||    
T  30924900 gtcacttttcatcaagtaataattacattactttctaacaaaaacttacttcttttggtgcttaa 30924836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 458
Target Start/End: Original strand, 39209371 - 39209476
Alignment:
Q  352 atttataaatagagttt-ctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgct 450  Q
    ||||||||||||| ||| |||| ||||||||||||| |||||| |||||| || |||||| | ||| | ||||||||||||| ||||||| ||| |||||    
T  39209371 atttataaatagaattttctgttttggaaatataaactgtcac-ttttattaaataataa-tacatcactttttaataaaaatttacttcgtttggtgct 39209468  T
Q  451 taatcaat 458  Q
    ||| ||||    
T  39209469 taaccaat 39209476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 431
Target Start/End: Original strand, 34678216 - 34678294
Alignment:
Q  353 tttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaa 431  Q
    ||||||||||||   | ||||||| |||| |||| ||| |||||| |||||||||||||| |||||||||||| |||||    
T  34678216 tttataaatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattacataattttttattaaaa 34678294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 13873799 - 13873718
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaactta 436  Q
    |||||||| | ||| |||||| |||||||||  ||| | |||| || ||||||| ||||||||||||||| |||||||||||    
T  13873799 tataaataaaatttttgtcttagaaatataagatgttatttttaattaagtaatgattgcataattttttcataaaaactta 13873718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 37919478 - 37919417
Alignment:
Q  378 aaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||||||| ||||| ||||||| ||||||||||| ||| | ||||||||||||| ||||||    
T  37919478 aaatataaactgtcattttttattaagtaataattacattactttttaataaaaatttactt 37919417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 352 - 458
Target Start/End: Original strand, 21052636 - 21052742
Alignment:
Q  352 atttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgctt 451  Q
    ||||||||||| | ||||  ||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  21052636 atttataaataaaatttccatcttgcaaatataaactgtcactttttatcaagtaataattacatgattttttaataaaaacttacttcttttggtgctt 21052735  T
Q  452 aatcaat 458  Q
    || ||||    
T  21052736 aaccaat 21052742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 7609551 - 7609654
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    ||||| |||| ||||||| ||||||||||||| | ||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||||||     
T  7609551 tataattagaatttctgttttggaaatataaactatcattttttatcaagtaataattacattactttttaataaaaacttacttcttttggtgcttaac 7609650  T
Q  455 caat 458  Q
    ||||    
T  7609651 caat 7609654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 14863438 - 14863335
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||| | ||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||||     
T  14863438 tataaatataatttatgtcttgaaaatataaactgtcactttttatcaagtaataattacattaatttttaataaaaacttactttttttggtgcttaac 14863339  T
Q  455 caat 458  Q
    ||||    
T  14863338 caat 14863335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 458
Target Start/End: Original strand, 2611175 - 2611263
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||||||  ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||| ||| |||||||| ||||    
T  2611175 tgtcttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaaacttacttcatttggtgcttaaccaat 2611263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 12187282 - 12187182
Alignment:
Q  358 aaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgca-taattttttaataaaaacttacttcttttagtgcttaatca 456  Q
    ||||||| ||| |||||||||||||||||  ||||||||||| |||||||||||| || || ||||||||||||||||||| |  ||| |||||||||||    
T  12187282 aaatagaatttttgtcttggaaatataaacggtcacttttta-caagtaataattacattatttttttaataaaaacttaccttatttggtgcttaatca 12187184  T
Q  457 at 458  Q
    ||    
T  12187183 at 12187182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 11320216 - 11320125
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||| | |||| |||| |||||||| ||||    
T  11320216 tttctatcttagaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaattaactt-ttttggtgcttaaccaat 11320125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 8435144 - 8435070
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    ||||||||||||||||||||| |||||| | ||| ||||||||  |  |||||||||||||| ||||||| ||||    
T  8435144 tgtcttggaaatataaagtgtaacttttgaccaactaataattataccattttttaataaaatcttacttatttt 8435070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 370 - 459
Target Start/End: Complemental strand, 35185342 - 35185254
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaata 459  Q
    ||||||| ||||||||| |||||||||| ||  |||||||||| ||| | ||||||||||||||||| ||  ||| |||||||| |||||    
T  35185342 tgtcttgaaaatataaactgtcactttt-atttagtaataattacattactttttaataaaaacttattttatttggtgcttaaccaata 35185254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 1056891 - 1056830
Alignment:
Q  375 tggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaactta 436  Q
    |||||||||||  ||| |||||| ||||| |||| ||| ||||||||||| |||||||||||    
T  1056891 tggaaatataatatgttacttttaatcaaataatgattacataattttttcataaaaactta 1056830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 31619408 - 31619318
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    |||||||||| ||||||||||  ||||||| | || || |||||||| ||| | ||||||||||||| ||||||| ||| |||||||| ||||    
T  31619408 tttctgtcttagaaatataaac-gtcacttct-atgaaataataattacattactttttaataaaaatttacttcatttggtgcttaaccaat 31619318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 355 - 468
Target Start/End: Complemental strand, 31647823 - 31647710
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||| ||||||||     
T  31647823 tataaatagaatttctgtcttagaaatataaactatcactttttatcaagtaataattacattactttttaataaaaacttatttcttttggtgcttaac 31647724  T
Q  455 caatagcccggggg 468  Q
    ||||| | ||||||    
T  31647723 caatacctcggggg 31647710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 355 - 459
Target Start/End: Original strand, 19147159 - 19147263
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    ||||| |||| ||||||||||| ||||||||| |||||||||||||||| |||||||| ||| | || |||||||||||||||||||||| |||||||||    
T  19147159 tataagtagaatttctgtcttgaaaatataaactgtcactttttatcaaataataattacattacttattaataaaaacttacttcttttggtgcttaat 19147258  T
Q  455 caata 459  Q
    |||||    
T  19147259 caata 19147263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 38320141 - 38320214
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||| ||| | ||||||||||||||||||||    
T  38320141 tttctgtcttggaaatataaactgtcacttcttattaagtaataattacattactttttaataaaaacttactt 38320214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 488 - 562
Target Start/End: Original strand, 24154276 - 24154347
Alignment:
Q  488 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaa 562  Q
    ||||||||||||||||||||| |||||||||||| ||||   |||||||||||||| ||||||||||||||||||    
T  24154276 ttatttatttaccactatatccctatttatgttgcatat---ttttctgcaatatataataaatactctatgaaa 24154347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 47397707 - 47397603
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||||| | || |||||||||| |||||||||||||||| ||||||||  || | |||| |||||||| ||||| ||||| ||||||||     
T  47397707 tataaatagaatttctattttagaaatataaactgtcactttttatcaaataataattatattacttttaaataaaaatttactacttttggtgcttaac 47397608  T
Q  455 caata 459  Q
    |||||    
T  47397607 caata 47397603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 48301287 - 48301407
Alignment:
Q  17 gcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagttagt 116  Q
    |||||||||||| |||| |||| || | ||||||||||| || | |||| ||| | |||||||||| |||||||||||| ||| |  ||||||| |||||    
T  48301287 gcataggattgtatggagtttgttgctagaaagaaaaataaaaataaaatagagcatattagctatgactataagcagactgcgc--agagaaaattagt 48301384  T
Q  117 taagatagtcataacatgattta 139  Q
    ||||||||  |||||||||||||    
T  48301385 taagatagcaataacatgattta 48301407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 54249060 - 54248994
Alignment:
Q  378 aaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    ||||||||| ||| | |||||||||||| |||||| ||  |||||||||||||||||||||||||||    
T  54249060 aaatataaactgttattttttatcaagtgataattacaatattttttaataaaaacttacttctttt 54248994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 31241974 - 31242045
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttac 437  Q
    ||||||||||| |||||||||  |||||||||||| || |||||||| ||| | ||||||||||||| ||||    
T  31241974 tttctgtcttgaaaatataaacggtcactttttattaaataataattacattactttttaataaaaatttac 31242045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 432
Target Start/End: Original strand, 16341110 - 16341190
Alignment:
Q  352 atttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaa 432  Q
    ||||| ||||| | ||| |||||| |||||||||| ||| |||||| || ||||||| ||| ||||||||||| |||||||    
T  16341110 atttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaa 16341190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 20542607 - 20542663
Alignment:
Q  356 ataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataatt 412  Q
    ||||||| | ||||| ||||| ||||||||| ||||||||||||||||||| |||||    
T  20542607 ataaataaaatttctatcttgtaaatataaactgtcactttttatcaagtagtaatt 20542663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 27284159 - 27284093
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaactta 436  Q
    ||||||||||||||||  ||| |||||| ||||| |||| |||||| || ||||| |||||||||||    
T  27284159 tgtcttggaaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaactta 27284093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 458
Target Start/End: Complemental strand, 16072429 - 16072340
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttag-tgcttaatcaat 458  Q
    |||||||||||||||||  || |||||| |  || |||| ||| ||| |||||||||||||| ||||| |||||||| ||||||| ||||    
T  16072429 tgtcttggaaatataaaccgttacttttgactaactaattattacatcattttttaataaaatcttacctcttttagctgcttaaccaat 16072340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 3319284 - 3319364
Alignment:
Q  378 aaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||| ||||| |||| ||||| ||||||||  || |  |||||||||||| ||| |||||||  ||||||||||||    
T  3319284 aaatataaactgtcatttttcatcaaataataattatattaccttttaataaaaatttatttcttttgatgcttaatcaat 3319364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 468
Target Start/End: Original strand, 50127361 - 50127472
Alignment:
Q  357 taaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatca 456  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||| ||| | ||||||||||||||||||||||||| || ||||| ||    
T  50127361 taaatagaatttctgtcttggaaatataaactgtcattttttatcgagtaataattacattactttttaataaaaacttacttcttttggtacttaacca 50127460  T
Q  457 atagcccggggg 468  Q
    ||  ||||||||    
T  50127461 atgccccggggg 50127472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 31884471 - 31884574
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||||| ||||||||||||||| || || |||||||||| |||||||| ||| | |||||||||||||||||||| |||| ||||||||     
T  31884471 tataaatagaatttctatcttggaaatataaactgacattttttatcaaataataattacattactttttaataaaaacttactttttttggtgcttaac 31884570  T
Q  455 caat 458  Q
    ||||    
T  31884571 caat 31884574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 458
Target Start/End: Original strand, 40391240 - 40391332
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||| | ||||| ||||||||| ||||| ||| |||||||| ||||    
T  40391240 tttctgtcttgaaaatataaactgtcactttttatcaagtaataattacattactttttgataaaaactcacttcatttggtgcttaaccaat 40391332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 366 - 458
Target Start/End: Original strand, 44109093 - 44109184
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||| ||||||||||||||| |||| |||||||| ||||||||||| ||| | ||||||||||||||||||||| ||| ||| |||||||||    
T  44109093 tttctatcttggaaatataaactgtccctttttattaagtaataattacattactttttaataaaaacttacttcattt-gtggttaatcaat 44109184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 488 - 566
Target Start/End: Complemental strand, 11643884 - 11643809
Alignment:
Q  488 ttatttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacat 566  Q
    |||||| ||||||| |||||||| |||||||||| ||||||   |||||||||||| ||||||||||||||||||||||    
T  11643884 ttatttttttaccattatatctcaatttatgttgcatattt---ttctgcaatatataataaatactctatgaaaacat 11643809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 30627626 - 30627730
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaa-taaaaacttacttcttttagtgcttaa 453  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||| ||||||| ||| ||| | ||||||| |||||| |||||||| || ||||||||    
T  30627626 tataaatagaatttatgtcttggaaatataacctgtcactttttataaagtaatgattacattactttttaattaaaaatttacttctcttggtgcttaa 30627725  T
Q  454 tcaat 458  Q
     ||||    
T  30627726 ccaat 30627730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 48282902 - 48282981
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaact 434  Q
    |||||||||| ||||||||||| ||||||||  ||||||||||||||| ||||||||| ||| | |||||| ||||||||    
T  48282902 tataaatagaatttctgtcttgaaaatataatctgtcactttttatcaggtaataattacattactttttagtaaaaact 48282981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 19066962 - 19066878
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    |||||||||| ||  |||||| |||||||||| |||||||||||| |||||||||||| ||  | ||||||||||||| ||||||    
T  19066962 tataaatagaattgttgtcttagaaatataaattgtcactttttaccaagtaataattacaatactttttaataaaaatttactt 19066878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 19114852 - 19114768
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    |||||||||| ||  |||||| |||||||||| |||||||||||| |||||||||||| ||  | ||||||||||||| ||||||    
T  19114852 tataaatagaattgttgtcttagaaatataaattgtcactttttaccaagtaataattacaatactttttaataaaaatttactt 19114768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 370 - 458
Target Start/End: Original strand, 26855853 - 26855940
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||| |  |||||||||||| ||||||  ||| |||||||| ||||    
T  26855853 tgtcttggaaatataatctgtcactttttatcaagtaataattacatta-cttttaataaaaatttactttatttggtgcttaaccaat 26855940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 33827847 - 33827913
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaa 432  Q
    |||||||||||||||||||||   ||||||||||| ||||||||||| ||| | |||||||||||||    
T  33827847 tttctgtcttggaaatataaacgatcactttttattaagtaataattacattactttttaataaaaa 33827913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 33840118 - 33840052
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaa 432  Q
    |||||||||||||||||||||   ||||||||||| ||||||||||| ||| | |||||||||||||    
T  33840118 tttctgtcttggaaatataaacgatcactttttattaagtaataattacattactttttaataaaaa 33840052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 13969125 - 13969199
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    ||||||| ||||||||| ||| |||||| || ||||||| ||| || |||||||| |||||||||||||| ||||    
T  13969125 tgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgtttt 13969199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 38192371 - 38192449
Alignment:
Q  17 gcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcaga 95  Q
    |||||||||| |||||||||| ||||| ||||||||||||| || |||| |||   ||| |||||||||||||| ||||    
T  38192371 gcataggattatttggaattttctgttagaaagaaaaatcagcataaaatagagtctatcagctataactataatcaga 38192449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 15419681 - 15419746
Alignment:
Q  374 ttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||||||||||| ||| ||||||||| |||||||||||  || | ||||||||||||| ||||||    
T  15419681 ttggaaatataaactgttactttttattaagtaataattatattactttttaataaaaatttactt 15419746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 393 - 458
Target Start/End: Complemental strand, 27742617 - 27742552
Alignment:
Q  393 ctttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    |||||||| ||||||||||| ||| | ||||||||||||| |||||||||||  ||||||| ||||    
T  27742617 ctttttattaagtaataattacattactttttaataaaaaattacttcttttgttgcttaaccaat 27742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 50468829 - 50468902
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    ||||| |||| |||||||||  ||||| ||||||| ||||||||||| ||| | ||||||||||||| ||||||    
T  50468829 tttctatcttagaaatataacctgtcattttttattaagtaataattacattactttttaataaaaatttactt 50468902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 33148179 - 33148231
Alignment:
Q  392 actttttatcaagtaataattgcataattttttaataaaaacttacttctttt 444  Q
    |||||| |||||||||| ||| || |||||||| |||||||||||||| ||||    
T  33148179 acttttgatcaagtaatgattacacaattttttcataaaaacttacttgtttt 33148231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 37913017 - 37913119
Alignment:
Q  357 taaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatca 456  Q
    |||||||| ||| | ||||| |||||||||  |||||||||||||||||||||||  ||| | |||||||||||||||||||||||||  ||||||| ||    
T  37913017 taaatagaatttttatcttgaaaatataaaccgtcactttttatcaagtaataatcacattaatttttaataaaaacttacttcttttgatgcttaacca 37913116  T
Q  457 ata 459  Q
    |||    
T  37913117 ata 37913119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 366 - 458
Target Start/End: Original strand, 21646500 - 21646591
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| ||| | |||||||| |||||||||||| ||| ||| |||| ||||    
T  21646500 tttctgtcttggaaatataaagtgtcac-ttttattaagtaataattacattactttttaatgaaaacttacttcatttggtgtttaaccaat 21646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 575
Target Start/End: Original strand, 37039096 - 37039178
Alignment:
Q  490 atttatttaccactatatctctatttatgttgtatatttattttctgcaatataaaataaatactctatgaaaacatactctaatt 575  Q
    |||| |||||||| |||||||||||||||||| ||||   |||||| ||||||| |||||||||| ||||||||||| | ||||||    
T  37039096 atttctttaccaccatatctctatttatgttgcatat---ttttctacaatatataataaatactttatgaaaacatccactaatt 37039178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 458
Target Start/End: Complemental strand, 19889828 - 19889744
Alignment:
Q  374 ttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||||||||||  |||||| |||||| ||||||||||| ||| | |||||||| |||||||||||| |||  ||||||| ||||    
T  19889828 ttggaaatataatatgtcaccttttattaagtaataattacattactttttaatgaaaacttacttcatttgatgcttaaccaat 19889744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 459
Target Start/End: Original strand, 23788417 - 23788520
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaat 454  Q
    |||||||||| ||| | | ||| ||||||||| | ||| ||||||| ||||||||||| ||| | ||||||||||||| ||| || |||| ||| |||||    
T  23788417 tataaatagaatttatattttgaaaatataaattatcattttttattaagtaataattacattactttttaataaaaattta-tttttttggtgtttaat 23788515  T
Q  455 caata 459  Q
    |||||    
T  23788516 caata 23788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 468
Target Start/End: Original strand, 11610471 - 11610534
Alignment:
Q  405 taataattgcataattttttaataaaaacttacttcttttagtgcttaatcaatagcccggggg 468  Q
    |||||||||||| | |||||||| |||||||||||| ||| |||||||| ||||  ||||||||    
T  11610471 taataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccggggg 11610534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 23760642 - 23760707
Alignment:
Q  394 tttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaata 459  Q
    ||||||||||||||||||| ||| | |||||||  |||| |||||| || |||||||||| |||||    
T  23760642 tttttatcaagtaataattacattactttttaaataaaatttactttttgtagtgcttaaccaata 23760707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 458
Target Start/End: Complemental strand, 4141730 - 4141639
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    ||||| |||| ||||||||||  ||||||||||||  |||||||||| ||| |  |||||||||||| ||||||  |||  ||||||||||||    
T  4141730 tttctctcttagaaatataaaccgtcactttttattcagtaataattacatta-cttttaataaaaatttactttatttgatgcttaatcaat 4141639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 566
Target Start/End: Complemental strand, 7475283 - 7475247
Alignment:
Q  530 ttttctgcaatataaaataaatactctatgaaaacat 566  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  7475283 ttttctgcaatatataataaatacactatgaaaacat 7475247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 13717264 - 13717189
Alignment:
Q  370 tgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttag 446  Q
    ||||||| ||||||||| ||| | |||| || ||||||||||| ||||| ||||| || ||||||||||| ||||||    
T  13717264 tgtcttgaaaatataaaatgttatttttaat-aagtaataattacataactttttgatgaaaacttacttattttag 13717189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 17641254 - 17641174
Alignment:
Q  377 gaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttag-tgcttaatca 456  Q
    |||||||||| ||| |||||| || ||| ||| |||||| || |||| ||| ||||||||||| |||||| ||||||||||    
T  17641254 gaaatataaaatgttacttttgataaagaaattattgcacaacttttcaatgaaaacttacttattttagatgcttaatca 17641174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 38903 - 38822
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaactta 436  Q
    |||||||||| ||| | ||||||||||||||| ||||| ||||||||||||||||||| ||| | |||||||||||||||||    
T  38903 tataaatagaatttatatcttggaaatataaactgtcattttttatcaagtaataattacattactttttaataaaaactta 38822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 458
Target Start/End: Original strand, 22454 - 22538
Alignment:
Q  374 ttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaatcaat 458  Q
    |||||||||||||  ||||||||||||||| |||||||| ||| | | ||||||||||||||||||||||| |||||||| ||||    
T  22454 ttggaaatataaaccgtcactttttatcaaataataattacattactctttaataaaaacttacttcttttggtgcttaaccaat 22538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 1113 - 1197
Alignment:
Q  352 atttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaactta 436  Q
    ||||||||||||| ||| | ||||| ||||||||| ||||||||||||| ||||||||||| ||| | |||||||||||| ||||    
T  1113 atttataaatagaatttttttcttgaaaatataaactgtcactttttattaagtaataattacattactttttaataaaagctta 1197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 1282 - 1330
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaa 403  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  1282 tataaatagaatttctgtcttggaaatataaactgtcactttttatcaa 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 1330 - 1379
Alignment:
Q  392 actttttatcaagtaataattgcataattttttaataaaaacttacttct 441  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  1330 actttttatcaagtaataattacatttctttttaataaaaacttacttct 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 52114 - 52030
Alignment:
Q  355 tataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttactt 439  Q
    |||||||||| ||  |||||| |||||||||| ||||| |||||| ||| |||||||| ||| | ||||||||||||||||||||    
T  52114 tataaatagaattgttgtcttagaaatataaattgtcattttttaccaaataataattacattactttttaataaaaacttactt 52030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 432
Target Start/End: Complemental strand, 51751 - 51671
Alignment:
Q  352 atttataaatagagtttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaa 432  Q
    ||||| ||||| | ||| |||||| |||||||||| ||| |||||| || ||||||| ||| ||||||||||| |||||||    
T  51751 atttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaa 51671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 884 - 971
Alignment:
Q  366 tttctgtcttggaaatataaagtgtcactttttatcaagtaataattgcataattttttaataaaaacttacttcttttagtgcttaa 453  Q
    ||||||||||||||||||||| | ||| ||||||| || |||||||| ||| |  || ||||||||| ||||||  ||||||| ||||    
T  884 tttctgtcttggaaatataaactatcattttttattaaataataattacattacattctaataaaaatttactttatttagtgtttaa 971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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