View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14441_low_4 (Length: 359)
Name: NF14441_low_4
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14441_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 2540642 - 2540981
Alignment:
| Q |
1 |
tttagcggtccttgcaccaacaaacatattcttattcaggtatttaatatatctaacattcacttttaaaacctagtacaataaacttataatcatatgt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
2540642 |
tttaacggtccttgcaccaacaaacatattcttattcaggtatttaatatatctaacattcacttttaagacctagtacaataaacttataatcat-tgt |
2540740 |
T |
|
| Q |
101 |
ataagttttaattgcggcttttaaaatgattaaagaaattatatttgttttatatttttgccatctatctttttgtagcttgaagggaaaatagatgcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2540741 |
ataagttttaattgcggcttttaaaatgattaaagaaattatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcac |
2540840 |
T |
|
| Q |
201 |
cttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctgtagaaggactcacaattaatggtcatggtcgaggagtactcgatggaga |
300 |
Q |
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| T |
2540841 |
cttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctgtagaaggactcacaattaatggtcatggtcgaggagtactcgatggaga |
2540940 |
T |
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| Q |
301 |
tggttcgacttggtggcaatgcaaatcatgtgatcgacctg |
341 |
Q |
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| T |
2540941 |
tggttcgacttggtggcaatgcaaatcatgtgatcgacctg |
2540981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 2531306 - 2531658
Alignment:
| Q |
1 |
tttagcggtccttgcaccaacaaacatattcttattcaggtatttaatatatctaacattcacttttaaaacctagtacaataaacttataatcatatgt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2531306 |
tttagcggtccttgcaccaacaaaaatattcttattcaggtatttaatatatctaacattcacttttaagacctagtacaataaacttataatcatatgt |
2531405 |
T |
|
| Q |
101 |
ataagtttt------------aattgcggcttttaaaatgattaaagaaattatatttgttttatatttttgccatctatctttttgtagcttgaaggga |
188 |
Q |
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| T |
2531406 |
ataagttttaattgtatttttaattgcggcttttaaaatatttaaagaaattatatttgttttgtatttttgccatctatctttttgtagcttgaaggga |
2531505 |
T |
|
| Q |
189 |
aaatagatgcaccttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctgtagaaggactcacaattaatggtcatggtcgaggagt |
288 |
Q |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
2531506 |
aaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatggtcgaggagt |
2531605 |
T |
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| Q |
289 |
actcgatggagatggttcgacttggtggcaatgcaaatcatgtgatcgacctg |
341 |
Q |
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| T |
2531606 |
actcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacctg |
2531658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 1829582 - 1829743
Alignment:
| Q |
156 |
ttttgccatctatcttt-ttgtagcttgaagggaaaatagatgcaccttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctgtag |
254 |
Q |
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|||| |||||||||| | ||| ||||||||||| | |||| |||||| ||||||| | ||| |||||| || ||||||||| |||| | ||| |||| |
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| T |
1829582 |
tttttccatctatctatattgcagcttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaa |
1829681 |
T |
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| Q |
255 |
aaggactcacaattaatggtcatggtcgaggagtactcgatggagatggttcgacttggtgg |
316 |
Q |
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| T |
1829682 |
atggactcacaattgatggtaatggtcaaggaggacttgatggagacggttctacttggtgg |
1829743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 316
Target Start/End: Original strand, 1864027 - 1864188
Alignment:
| Q |
156 |
ttttgccatctatcttt-ttgtagcttgaagggaaaatagatgcaccttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctgtag |
254 |
Q |
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|||| |||||||||| | ||| ||||||||||| | |||| |||||| ||||||| | ||| |||||| || ||||||||| |||| | ||| |||| |
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| T |
1864027 |
tttttccatctatctatattgcagcttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaa |
1864126 |
T |
|
| Q |
255 |
aaggactcacaattaatggtcatggtcgaggagtactcgatggagatggttcgacttggtgg |
316 |
Q |
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| T |
1864127 |
atggactcacaattgatggtaatggtcaaggaggacttgatggagacggttctacttggtgg |
1864188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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