View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14441_low_9 (Length: 276)
Name: NF14441_low_9
Description: NF14441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14441_low_9 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13737 - 13989
Alignment:
| Q |
1 |
ggcttcgtaattaggtaagcttcgtagttaggtaagagattgaagcagaagacttataattaagtaattcaagagttcgagatctccaattagtataata |
100 |
Q |
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| T |
13737 |
ggcttcgtaattaggtaagcttcgtagt-----aagagatttaagcagaagacttataattaagtaattcaagagttcgagatctccaattagtataata |
13831 |
T |
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| Q |
101 |
ctaacaatactaacttttgtcgttaaaaatgtttaccctggtcttcggagacacaagaaaacagctggtttatcgcgccaaagttcggatgcctttagtg |
200 |
Q |
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| T |
13832 |
ctaacaatactaacttttgtcgttaaaaatgtttaccctggtcttcggagacacaagaaaacagctggtttatcgcgccaaagttcggatgcctttagtg |
13931 |
T |
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| Q |
201 |
gtggtgttttcattttcaccaatggttccataccaaacttatactcaggagttaattt |
258 |
Q |
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| T |
13932 |
gtggtgttttcattttcaccaatggttccataccaaacttatactcaggagttaattt |
13989 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 27337213 - 27337335
Alignment:
| Q |
132 |
tttaccctggtcttcggagacacaagaaaacagctggtttatcgcgccaaagttcggatgcctttagtggtggtgttttcattttcaccaatggttccat |
231 |
Q |
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| T |
27337213 |
tttaccctggtcgccggagacaaaggaacacagctggtttatctcgccacagttctgcagctttcattggaggtgtcttcatttttaccaatggttccat |
27337312 |
T |
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| Q |
232 |
accaaacttatactcaggagtta |
254 |
Q |
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| T |
27337313 |
gccaatcttatactctggagtta |
27337335 |
T |
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