View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_high_14 (Length: 246)
Name: NF14442_high_14
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 4674775 - 4674989
Alignment:
| Q |
15 |
aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag |
114 |
Q |
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| T |
4674775 |
aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag |
4674874 |
T |
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| Q |
115 |
cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttttccactaaccttcttacctcacttaagacctgcacagattgataatt |
214 |
Q |
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| T |
4674875 |
cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttctccaccaaccttcttacctcacttaagacctgcacagatcgataatt |
4674974 |
T |
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| Q |
215 |
atcaacatatcatac |
229 |
Q |
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| T |
4674975 |
atcaacatatcatac |
4674989 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 34548233 - 34548310
Alignment:
| Q |
87 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
164 |
Q |
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||||||| | ||| |||||||| |||| |||| |||||||| || |||| ||||||||| |||||||||||||||||| |
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| T |
34548233 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
34548310 |
T |
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