View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_high_2 (Length: 498)
Name: NF14442_high_2
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 7624369 - 7623874
Alignment:
| Q |
1 |
tgaatgaaatgtaagagacaatcgatcgttaagtgatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaagttgatccgaaattatgt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
7624369 |
tgaatgaaacgtaagagacaatcgatcgttaagtgatggttgttcaatagacatcttaaaattgttcacttgactgaaaaaagttgatccgaaattacgt |
7624270 |
T |
|
| Q |
101 |
ctcaatcaaatgttactcagtaagataaacgatcgagagtacgacccgaatacgagcgaaattgaggtgtctattttcctattaaagatgtgtgttacgt |
200 |
Q |
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|||||||| ||||||||| |||| | || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
7624269 |
ctcaatcagatgttactcggtaaaacaagcgatcgagagtacgacccgaacacgagcgaaattgaggtgtctatttttctattaaaggtgtgtgttacgt |
7624170 |
T |
|
| Q |
201 |
tacgtgtaaaaatttatgacaatggaatctttcattctcattatgctcacaatgggcccccatgcctacacttgttttctttatattttcgagagtcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7624169 |
tacgtgtaaaaatttatgacaatggaatctttcattctcattatgctcacaatgggcccccatgcctacacttgttttctttatatttttgagagtcttt |
7624070 |
T |
|
| Q |
301 |
gtagaatca--ttgagagtcatggagattgatcttgtgcttctttctctcttgccaatcttaattctattcattatacacatccacaaaataaagaatac |
398 |
Q |
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| T |
7624069 |
gtagaatcattttgagagtcatggagattgatcttgtgcttctttctctcttgccaatcttaattctattcattatacacatccacaaaataaagaatac |
7623970 |
T |
|
| Q |
399 |
tagaagagcatcatcaactccaccaggtccaaaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccctatg |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7623969 |
tagaagagcatcatcaactccaccaggtccaaaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccttatg |
7623874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 330 - 494
Target Start/End: Complemental strand, 7637130 - 7636966
Alignment:
| Q |
330 |
tcttgtgcttctttctctcttgccaatcttaattctattcattatacacatccacaaaataaagaatactagaagagcatcatcaactccaccaggtcca |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||||| |
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| T |
7637130 |
tcttgtgcttctttctctcttgccaatcttaattctattcattatacacatctacaaaataaggagtactagtagagcatcatcaactccaccaggtcca |
7637031 |
T |
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| Q |
430 |
aaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccctatg |
494 |
Q |
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| T |
7637030 |
aaaccacttcctctaattggaaatctacaccagcttgacccttcatccccacatcactccttatg |
7636966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 352 - 494
Target Start/End: Complemental strand, 7630325 - 7630183
Alignment:
| Q |
352 |
ccaatcttaattctattcattatacacatccacaaaataaagaatactagaagagcatcatcaactccaccaggtccaaaaccacttcctctaattggaa |
451 |
Q |
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|||||| | ||| |||| ||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7630325 |
ccaatccttattatattaattatccacatacacaaaacaaagagtactagaagagcatcatcaactccaccaggtccaaaaccatttcctctaattggaa |
7630226 |
T |
|
| Q |
452 |
atttacaccagcttgacccttcatccccacatcactccctatg |
494 |
Q |
| |
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|| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
7630225 |
atctacaccaacttgacccttcatccccacatcactccctatg |
7630183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 29173150 - 29173102
Alignment:
| Q |
34 |
tgatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaa |
82 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||| |||||||| |
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| T |
29173150 |
tgatggttactcaatagacatctcaaaattgttcatttgattgaaaaaa |
29173102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 9701051 - 9701100
Alignment:
| Q |
40 |
ttgttcaatagacatcttaaaattgttcatttgactgaaaaaagttgatc |
89 |
Q |
| |
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|||||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
9701051 |
ttgttcaatagatctcttaaaattgttcatcttgctgaaaaaagttgatc |
9701100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 22640028 - 22640082
Alignment:
| Q |
35 |
gatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaagttgatc |
89 |
Q |
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||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |
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| T |
22640028 |
gatggttgttcaatagataccgcaaaattattcatttgactgaaaaaagttgatc |
22640082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 35978600 - 35978649
Alignment:
| Q |
34 |
tgatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaag |
83 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |||||| ||||||| |
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| T |
35978600 |
tgatggttgctcaatagacaccttaaaattgttcacttgactaaaaaaag |
35978649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 45260569 - 45260606
Alignment:
| Q |
34 |
tgatggttgttcaatagacatcttaaaattgttcattt |
71 |
Q |
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||||||||| |||||| ||||||||||||||||||||| |
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| T |
45260569 |
tgatggttgctcaatacacatcttaaaattgttcattt |
45260606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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