View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14442_high_4 (Length: 463)

Name: NF14442_high_4
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14442_high_4
NF14442_high_4
[»] chr2 (16 HSPs)
chr2 (19-463)||(35872660-35873092)
chr2 (189-364)||(26580056-26580231)
chr2 (220-339)||(18183441-18183560)
chr2 (220-339)||(14407963-14408083)
chr2 (221-335)||(9889333-9889454)
chr2 (243-342)||(21374232-21374331)
chr2 (219-364)||(5511787-5511931)
chr2 (240-296)||(21373987-21374043)
chr2 (220-275)||(3003981-3004036)
chr2 (220-274)||(11339771-11339825)
chr2 (226-279)||(43203538-43203591)
chr2 (220-264)||(1544128-1544171)
chr2 (220-264)||(14522475-14522519)
chr2 (220-264)||(21213970-21214014)
chr2 (220-276)||(26760899-26760955)
chr2 (281-337)||(37253287-37253343)
[»] chr8 (15 HSPs)
chr8 (220-339)||(30590423-30590542)
chr8 (220-305)||(38887076-38887161)
chr8 (220-364)||(26642562-26642706)
chr8 (220-328)||(26639086-26639194)
chr8 (220-335)||(34529962-34530077)
chr8 (220-335)||(39590673-39590787)
chr8 (190-276)||(16213209-16213295)
chr8 (217-285)||(15157054-15157122)
chr8 (220-279)||(25971401-25971460)
chr8 (220-264)||(28488417-28488461)
chr8 (200-335)||(30602854-30602987)
chr8 (221-335)||(16956608-16956722)
chr8 (220-279)||(44933151-44933210)
chr8 (308-339)||(45031177-45031208)
chr8 (200-274)||(25930197-25930271)
[»] chr5 (6 HSPs)
chr5 (220-339)||(16275216-16275335)
chr5 (220-335)||(4796333-4796448)
chr5 (220-337)||(31973446-31973563)
chr5 (220-337)||(15844237-15844353)
chr5 (220-335)||(904767-904882)
chr5 (220-265)||(31973209-31973254)
[»] chr7 (25 HSPs)
chr7 (185-339)||(21033840-21033995)
chr7 (221-339)||(14595891-14596009)
chr7 (221-339)||(16015419-16015537)
chr7 (220-335)||(32000792-32000907)
chr7 (220-342)||(422668-422790)
chr7 (220-339)||(30610818-30610935)
chr7 (223-337)||(39079953-39080067)
chr7 (220-301)||(41389281-41389362)
chr7 (227-333)||(25589087-25589192)
chr7 (222-339)||(14596203-14596319)
chr7 (222-339)||(16015731-16015847)
chr7 (220-342)||(41387505-41387627)
chr7 (220-253)||(39079725-39079758)
chr7 (226-275)||(46753108-46753157)
chr7 (220-296)||(12840625-12840701)
chr7 (220-276)||(14092256-14092312)
chr7 (220-276)||(14402274-14402330)
chr7 (188-228)||(23721065-23721105)
chr7 (219-262)||(8585065-8585108)
chr7 (243-329)||(30899010-30899096)
chr7 (282-335)||(3973205-3973258)
chr7 (187-276)||(21048788-21048877)
chr7 (220-296)||(28359058-28359135)
chr7 (267-335)||(10406600-10406668)
chr7 (222-301)||(46870290-46870370)
[»] chr6 (8 HSPs)
chr6 (221-335)||(1206193-1206307)
chr6 (228-337)||(18286869-18286977)
chr6 (220-258)||(9602078-9602116)
chr6 (220-253)||(130763-130796)
chr6 (220-305)||(9156145-9156230)
chr6 (185-228)||(1206006-1206049)
chr6 (222-260)||(1205639-1205677)
chr6 (220-339)||(1205874-1205993)
[»] chr4 (11 HSPs)
chr4 (220-339)||(48046331-48046451)
chr4 (227-335)||(23311484-23311592)
chr4 (220-335)||(26942886-26943000)
chr4 (220-339)||(52043088-52043207)
chr4 (220-364)||(30490939-30491080)
chr4 (211-264)||(13254349-13254402)
chr4 (223-339)||(3136955-3137070)
chr4 (222-253)||(26942683-26942714)
chr4 (220-339)||(54595387-54595506)
chr4 (220-329)||(3137656-3137762)
chr4 (220-264)||(54595146-54595190)
[»] chr1 (23 HSPs)
chr1 (220-339)||(19811021-19811140)
chr1 (220-334)||(34626789-34626903)
chr1 (220-339)||(41590549-41590661)
chr1 (222-365)||(17557707-17557848)
chr1 (222-339)||(18998370-18998488)
chr1 (227-289)||(18998693-18998755)
chr1 (220-346)||(41590232-41590357)
chr1 (220-285)||(51188878-51188943)
chr1 (236-339)||(19809968-19810070)
chr1 (220-339)||(19810708-19810826)
chr1 (220-291)||(40566324-40566395)
chr1 (220-291)||(51515689-51515761)
chr1 (220-291)||(6868108-6868179)
chr1 (222-296)||(7907897-7907972)
chr1 (220-338)||(12410380-12410499)
chr1 (308-355)||(19609179-19609226)
chr1 (185-228)||(34626916-34626959)
chr1 (222-276)||(13978562-13978616)
chr1 (220-270)||(33248409-33248459)
chr1 (220-270)||(33268581-33268631)
chr1 (220-262)||(43423254-43423296)
chr1 (220-316)||(12581376-12581473)
chr1 (220-261)||(19459698-19459739)
[»] chr3 (10 HSPs)
chr3 (219-335)||(51917854-51917970)
chr3 (227-339)||(25568479-25568591)
chr3 (220-276)||(39225098-39225154)
chr3 (220-291)||(662701-662772)
chr3 (200-274)||(53789075-53789149)
chr3 (220-296)||(351158-351234)
chr3 (220-335)||(34250366-34250481)
chr3 (220-253)||(54861500-54861533)
chr3 (220-264)||(13769376-13769420)
chr3 (220-264)||(45443255-45443299)
[»] scaffold0103 (1 HSPs)
scaffold0103 (226-335)||(47381-47490)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 35872660 - 35873092
Alignment:
Q  19 atcttgccacgtgctttatctgttcctttctgcatcatgcttaaccatcggtctggtttgcagatcagg-tgatctggtccagtttttaaaactatgatt 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||| ||||    
T  35872660 atcttgcgacgtgctttatctgttcctttctgcatcatgcttaaccatcggtctggtttgcagatcagggtggcctggtccagtttttaaaactacgatt 35872759  T
Q  118 acatgttcaggtttcttttttgattcactttgacaataaacaattgttgggaa---caacttaattgcgg-ccgcccctagccacttaattgcggcattt 213  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||   |  ||| |||| || |||||||||                ||||    
T  35872760 acgtgttcaggtttcttttttgattcactttgacaataaacaattgttggaaattccgccttcattgtggtccgccccta----------------attt 35872843  T
Q  214 tggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcac 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||||||| |||| || | |    
T  35872844 tggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagaga-atgaccttagtaatgtttgtaaatcttgaacaggcccctc 35872942  T
Q  314 ctttcaagccggttttgtaaggttgaatttggcttaacccaatttccaagaacaatgatactagaggttaattaatcattttctctgtgttatcgtcttt 413  Q
    ||||| ||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||| ||| ||| |    
T  35872943 ctttctagctggttttgcaaggttgaatttggcttgacccaattttcaagaacaatgataccagaggttaattaatcattatctttgtgtcatcatctat 35873042  T
Q  414 gttcaggaataaaatttcatttgttcgtcttgatgtgacattgaatctgc 463  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35873043 gttcaggaataaaatttcatttgttcgtcttgatgggacattgaatctgc 35873092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 364
Target Start/End: Complemental strand, 26580231 - 26580056
Alignment:
Q  189 ccctagccacttaattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtg 288  Q
    |||||||| | |||||||||||||| ||||| |||||||||||||||||||||||  |  ||||| |||| ||||| ||||| |||||  | ||||||||    
T  26580231 ccctagccgcctaattgcggcatttgggttgtcttcattgtgttgggtgtgaaggtttcaatttagtcccgcattgcctagaaatatgggctgtgtagtg 26580132  T
Q  289 tttgtaaatcttggacagacctcacctttcaagccggttttgtaaggttgaatttggcttaacccaatttccaaga 364  Q
    |||||||| || || ||| |||| ||||  ||||| || ||||||||||||||| |||  ||||||| ||| ||||    
T  26580131 tttgtaaagctcgggcagccctctccttataagccagtcttgtaaggttgaattaggcccaacccaaattctaaga 26580056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 18183441 - 18183560
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||||||||| ||| |||||||| |||   |||| || |||||||| |  ||||||||||| |||| ||||| ||| | ||||||| ||    
T  18183441 ccttcattgtgttgggtgtgatgggatggatttagtcctgaattgccttgagatatggcttgtgtagtgtttataaagcttgggcagccttcaccttaca 18183540  T
Q  320 agccggttttgtaaggttga 339  Q
    ||||||||||||||||||||    
T  18183541 agccggttttgtaaggttga 18183560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 14407963 - 14408083
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggt-ggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttc 318  Q
    |||||||||||||| |||||||||||| ||||||  || ||||||| |||||||||||  | ||||||||||| |||| ||||  ||  ||| ||||| |    
T  14407963 ccttcattgtgttgagtgtgaaggggttggatttggtctcacattgtctagagatatggtctgtgtagtgtttataaagcttgtgcaacccttaccttac 14408062  T
Q  319 aagccggttttgtaaggttga 339  Q
    |||||||||||||||||||||    
T  14408063 aagccggttttgtaaggttga 14408083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 9889454 - 9889333
Alignment:
Q  221 cttcattgtgttgggtgtgaaggggtggattt-attcccacattgact------agagatatgacccgtgtagtgtttgtaaatcttggacagacctcac 313  Q
    ||||||||| |||||||||||||| ||||||| | |||||||||| ||      |||||||||| ||||||||||||| | ||  |||| ||| ||||||    
T  9889454 cttcattgtattgggtgtgaagggatggattttagtcccacattgcctttgcctagagatatgagccgtgtagtgtttatgaaatttgggcagccctcac 9889355  T
Q  314 ctttcaagccggttttgtaagg 335  Q
    | | ||||||||||||||||||    
T  9889354 catacaagccggttttgtaagg 9889333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 21374232 - 21374331
Alignment:
Q  243 gggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggttttgtaaggttgaatt 342  Q
    ||||||||||| ||  ||||||  |||||||||| || |||||||||||||||| | ||| ||  | ||||||| ||||| |||||||||||| ||||||    
T  21374232 gggtggatttagtcatacattgcatagagatatggcctgtgtagtgtttgtaaagcatgggcaaccttcaccttacaagctggttttgtaaggatgaatt 21374331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 5511931 - 5511787
Alignment:
Q  219 gccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttc 318  Q
    ||||||||||||||| ||||||||||||| ||||| ||| | |||| |||||||||| | |   ||||||||| |||| ||||| | | ||||||||       
T  5511931 gccttcattgtgttgtgtgtgaaggggtgtatttagtccaatattgcctagagatat-agcttggtagtgtttataaagcttgggctgccctcacctaaa 5511833  T
Q  319 aagccggttttgtaaggttgaatttggcttaacccaatttccaaga 364  Q
    |||||||||||  |||||||| || |||  ||||||| ||| ||||    
T  5511832 aagccggttttagaaggttgagttaggcccaacccaaattctaaga 5511787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 21373987 - 21374043
Alignment:
Q  240 aaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaa 296  Q
    |||||||| ||||| |||||||||| ||||||||||| || ||||||||||| ||||    
T  21373987 aaggggtgaatttagtcccacattgcctagagatatggcctgtgtagtgtttataaa 21374043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 3004036 - 3003981
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatat 275  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||| || ||||||||||    
T  3004036 ccttcattgtgttgggtgtgaggggatgggtttagtcccacaatgcctagagatat 3003981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 11339825 - 11339771
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagata 274  Q
    ||||||||||||| |||| ||| ||||||||||| ||||||| || |||||||||    
T  11339825 ccttcattgtgttaggtgcgaaagggtggatttagtcccacactgcctagagata 11339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 43203538 - 43203591
Alignment:
Q  226 ttgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacc 279  Q
    |||||||||||  |||||| |||||||| |||||| ||| ||||||||||||||    
T  43203538 ttgtgttgggtccgaagggttggatttagtcccacgttgtctagagatatgacc 43203591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 1544128 - 1544171
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    |||||||||||||||||||||| |||| | |||||||||||||||    
T  1544128 ccttcattgtgttgggtgtgaa-gggtaggtttattcccacattg 1544171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 14522475 - 14522519
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    ||||||||||| ||||||| ||||| |||||||| ||||||||||    
T  14522475 ccttcattgtgatgggtgtaaagggctggatttaatcccacattg 14522519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 21214014 - 21213970
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    ||||||||||||||| | ||| |||||||||||| ||||||||||    
T  21214014 ccttcattgtgttggctttgagggggtggatttagtcccacattg 21213970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 26760955 - 26760899
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    |||| ||||||||| || ||||||||||| |||| ||||||||||  ||||||||||    
T  26760955 cctttattgtgttgagtttgaaggggtgggtttagtcccacattgcttagagatatg 26760899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 37253343 - 37253287
Alignment:
Q  281 gtgtagtgtttgtaaatcttggacagacctcacctttcaagccggttttgtaaggtt 337  Q
    |||||||||||||||| ||||| ||   |||||||  ||||||||||||||||||||    
T  37253343 gtgtagtgtttgtaaagcttgggcaacactcacctcacaagccggttttgtaaggtt 37253287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 30590423 - 30590542
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||  |||| ||||| |  ||||||||||| |||| ||||| ||| ||||||||| ||    
T  30590423 ccttcattgtgtttggtgtgaaggggtggatttagtcccacattgcatagatatatggcatgtgtagtgtttataaagcttgggcagccctcaccttaca 30590522  T
Q  320 agccggttttgtaaggttga 339  Q
    ||||||||||||||||||||    
T  30590523 agccggttttgtaaggttga 30590542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 38887076 - 38887161
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggaca 305  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||  ||||||| || |||| ||||||||    
T  38887076 ccttcattgtgttgggtgtgaaggggttgatttaatcccacattgcctagagatatgacctatgtagtgcttataaagcttggaca 38887161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 220 - 364
Target Start/End: Original strand, 26642562 - 26642706
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||||||| ||||||  ||||||||||| | |||||||| |||||||||||||  ||||||||||| ||||| ||    || | ||||||| ||    
T  26642562 ccttcattgtgttgagtgtgattgggtggatttagttccacattgcctagagatatgacatgtgtagtgtttataaattttaagaagccttcaccttaca 26642661  T
Q  320 agccggttttgtaaggttgaatttggcttaacccaatttccaaga 364  Q
    ||||||||| |||||||||| || |||  ||||||| ||| ||||    
T  26642662 agccggtttggtaaggttgatttaggcccaacccaaattctaaga 26642706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 26639086 - 26639194
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||||||| |||||| |||||||||||| |||||||||| || |||||| |||  ||||||||||| ||||| |||   || | ||||||| ||    
T  26639086 ccttcattgtgttgagtgtgagggggtggatttagtcccacattgccttgagatacgacatgtgtagtgtttataaattttgagaagccttcaccttaca 26639185  T
Q  320 agccggttt 328  Q
    |||||||||    
T  26639186 agccggttt 26639194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 34529962 - 34530077
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||| ||||  | ||||||||||| |||| ||||| ||  | ||||||  ||    
T  34529962 ccttcattgtgttgggtgtaaaggggcggatttagtcccacattgattagaggtatggtctgtgtagtgtttataaagcttgggcatccgtcacctcaca 34530061  T
Q  320 agccggttttgtaagg 335  Q
    |||  |||||||||||    
T  34530062 agcttgttttgtaagg 34530077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 39590673 - 39590787
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||| ||||||||||||||| || |||  |||||  |||||||||| || || |||||||| |||| | ||| ||| ||||||||| ||    
T  39590673 ccttcattgtgttgg-tgtgaaggggtggatatagtccagcattgcttagagatatggcctgtctagtgtttataaagcatgggcagccctcaccttaca 39590771  T
Q  320 agccggttttgtaagg 335  Q
    | || |||||||||||    
T  39590772 aaccagttttgtaagg 39590787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 16213295 - 16213209
Alignment:
Q  190 cctagccacttaattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    ||||||| | ||||||| |||  | ||| |||||||||||||||| |||||||||||||||||| || |||| || |||||||||||    
T  16213295 cctagccgcctaattgcagcaagtgggtcgccttcattgtgttggatgtgaaggggtggatttagtctcacactgcctagagatatg 16213209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 15157054 - 15157122
Alignment:
Q  217 ttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgta 285  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||||||||| || ||||||| || |||||    
T  15157054 ttgcgttcgttgtgttgggtgtgaaagggtggatttagtcccacattgaatatagatatggcctgtgta 15157122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 25971401 - 25971460
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacc 279  Q
    ||||||||||| |||||||||||||||||||| | || ||||||| | ||||||||||||    
T  25971401 ccttcattgtgctgggtgtgaaggggtggattcagtcacacattgccaagagatatgacc 25971460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 28488461 - 28488417
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  28488461 ccttcattgtgttgggtttgaaggggtggatttagtcccatattg 28488417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 335
Target Start/End: Original strand, 30602854 - 30602987
Alignment:
Q  200 taattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatct 299  Q
    |||||||||| ||| ||||||||||| ||| |||||| ||||  ||||||||||  |||||||||  ||||||| || |  ||||||||||| |||| |     
T  30602854 taattgcggcttttaggttgccttcactgtattgggtttgaa--ggtggatttagacccacattgcttagagatgtggcatgtgtagtgtttataaaaca 30602951  T
Q  300 tggacagacctcacctttcaagccggttttgtaagg 335  Q
    ||| ||| | || |||| ||  ||||||||||||||    
T  30602952 tgggcagccttccccttacacaccggttttgtaagg 30602987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 16956608 - 16956722
Alignment:
Q  221 cttcattgtgt-tgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||| || |||||| ||||||| |||| |||| ||||  ||||||||| |||  | ||||||||| ||||| |||| ||| ||||||||| ||    
T  16956608 cttcattgtgtgtgtgtgtgagggggtgg-tttagtccctcattacctagagatacgacatgcgtagtgtttataaattttgggcagccctcaccttaca 16956706  T
Q  320 agccggttttgtaagg 335  Q
    ||  ||||||||||||    
T  16956707 aggtggttttgtaagg 16956722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 44933210 - 44933151
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacc 279  Q
    ||||||||||||||||| |||||||||||||||| || |||||    |||||||||||||    
T  44933210 ccttcattgtgttgggtttgaaggggtggatttagtctcacatcacttagagatatgacc 44933151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 339
Target Start/End: Complemental strand, 45031208 - 45031177
Alignment:
Q  308 cctcacctttcaagccggttttgtaaggttga 339  Q
    ||||||||||||||||||||||||||||||||    
T  45031208 cctcacctttcaagccggttttgtaaggttga 45031177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 25930197 - 25930271
Alignment:
Q  200 taattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagata 274  Q
    ||||||| |||||| |||| ||||||||||||| ||| |||||||| || |||| || ||||||| ||| |||||    
T  25930197 taattgcagcatttgggttcccttcattgtgttaggtatgaaggggcgggtttagtctcacattgcctatagata 25930271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 16275216 - 16275335
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||| ||||||||||| || ||||||||| ||||||  |||| ||| ||||||||| ||    
T  16275216 ccttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcctgtgtagtgtgtgtaaagtttgggcagccctcaccttaca 16275315  T
Q  320 agccggttttgtaaggttga 339  Q
    ||  ||||||||||||||||    
T  16275316 aggtggttttgtaaggttga 16275335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 4796333 - 4796448
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||||||||||||||||||||||||||| || |||||||  |||||||||| |  ||||||||||| |||| | ||| ||| ||||||||| ||    
T  4796333 ccttcattgtgttgggtgtgaaggggtggatttagtcacacattgcttagagatatggcatgtgtagtgtttataaagcatgggcagccctcaccttaca 4796432  T
Q  320 agccggttttgtaagg 335  Q
    ||| ||||||||||||    
T  4796433 agcgggttttgtaagg 4796448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 31973563 - 31973446
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||  |||||||||| ||||  |||| ||| ||||||||  ||    
T  31973563 ccttcattgtgttgggtgtgaaagggtggatttagtcccacattgtctagagatatggcctatgtagtgtttataaagtttgggcagccctcacctcaca 31973464  T
Q  320 agccggttttgtaaggtt 337  Q
     || ||||||||||||||    
T  31973463 cgctggttttgtaaggtt 31973446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 15844353 - 15844237
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||||||| ||||||||||||||||||| |||||||||  |||||||||||| | |||| ||| || ||||  ||||  || ||||||| | ||    
T  15844353 ccttcattgtgttgagtgtgaaggggtggatttagtcccacatttcctagagatatga-cagtgttgtgcttataaagtttgggaagccctcaccataca 15844255  T
Q  320 agccggttttgtaaggtt 337  Q
    ||||||||||||||||||    
T  15844254 agccggttttgtaaggtt 15844237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 904882 - 904767
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||  | |||||||||||||||| ||||||||||   | | ||||| |  ||||||||||| |||| ||||  ||  ||||||||| ||    
T  904882 ccttcattgtgttgcctttgaaggggtggatttagtcccacattgctaacatatatggcttgtgtagtgtttataaaacttgagcatccctcaccttaca 904783  T
Q  320 agccggttttgtaagg 335  Q
    ||||||||||||||||    
T  904782 agccggttttgtaagg 904767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 31973254 - 31973209
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattga 265  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  31973254 ccttcgttgtgttgggtttgaaggggtggatttagtccctcattga 31973209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 185 - 339
Target Start/End: Complemental strand, 21033995 - 21033840
Alignment:
Q  185 ccgcccctagccacttaattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgt 284  Q
    |||||||||||||| ||||||  |||||| ||||||||||||| ||||| ||||||||||||| ||||| || ||||||| ||||||||||| |   |||    
T  21033995 ccgcccctagccacctaattgtagcatttgggttgccttcattatgttgtgtgtgaaggggtgaatttagtctcacattgcctagagatatggcatttgt 21033896  T
Q  285 agtgtttgt-aaatcttggacagacctcacctttcaagccggttttgtaaggttga 339  Q
     |||||| | ||| ||||| ||| |||||||||  |||||  ||||||||||||||    
T  21033895 ggtgtttataaaagcttgggcagccctcaccttaaaagccaattttgtaaggttga 21033840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 14596009 - 14595891
Alignment:
Q  221 cttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaa 320  Q
    |||||||||||||  ||||||||||||||||||  ||||| ||| ||||||||||| |  ||||||||||| ||||  |||| ||| |||||||||  ||    
T  14596009 cttcattgtgttgactgtgaaggggtggatttagccccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaa 14595910  T
Q  321 gccggttttgtaaggttga 339  Q
    |||||||||||||||||||    
T  14595909 gccggttttgtaaggttga 14595891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 16015537 - 16015419
Alignment:
Q  221 cttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaa 320  Q
    |||||||||||||  |||||||||||||||||| |||||| ||| ||||||||||| |  ||||||||||| ||||  |||| ||| |||||||||  ||    
T  16015537 cttcattgtgttgactgtgaaggggtggatttagtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaa 16015438  T
Q  321 gccggttttgtaaggttga 339  Q
    || ||||||||||||||||    
T  16015437 gctggttttgtaaggttga 16015419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 32000792 - 32000907
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||| ||||||| | ||| ||| |||||||| ||||||| ||  |||||||||| || ||||||||||| |||| ||||| ||| ||||||||| ||    
T  32000792 ccttcatggtgttggctttgaggggatggatttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaagcttgggcagccctcaccttaca 32000891  T
Q  320 agccggttttgtaagg 335  Q
    ||||||||||||||||    
T  32000892 agccggttttgtaagg 32000907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 422790 - 422668
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||||||||||||||||  |||| |||||||||| ||||||||||| ||  || |||| || |||| ||||| |||  ||||||||  |    
T  422790 ccttcattgtgttgggtgtgaaggggtgactttaatcccacattgcctagagatatggcctatgcagtgattataaagcttgggcagctctcaccttaaa 422691  T
Q  320 agccggttttgtaaggttgaatt 342  Q
    | ||||||| |||||||||||||    
T  422690 atccggtttcgtaaggttgaatt 422668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 30610935 - 30610818
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttc- 318  Q
    |||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||| ||    |||||||| |||| ||||| ||| ||||||||| |     
T  30610935 ccttcattgtgttgggtgggaaggggtggatttaatctcacattgcctagagatatggcc---ttagtgtttataaagcttgggcagccctcaccttaca 30610839  T
Q  319 aagccggttttgtaaggttga 339  Q
    |||| ||||||||||||||||    
T  30610838 aagctggttttgtaaggttga 30610818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 39080067 - 39079953
Alignment:
Q  223 tcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagc 322  Q
    ||||||| | ||||||| ||||||||||||| || ||||||| |||||||||||||  ||||||||||| |||| ||||  ||| || ||| || |||||    
T  39080067 tcattgtatcgggtgtggaggggtggatttaatctcacattgcctagagatatgacatgtgtagtgtttataaaacttgtgcagcccccactttacaagc 39079968  T
Q  323 cggttttgtaaggtt 337  Q
    |||||||||||||||    
T  39079967 cggttttgtaaggtt 39079953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 41389281 - 41389362
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttg 301  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||  || ||||||| ||| |||| ||||    
T  41389281 ccttcattgtgttaggtgtgaaggggtggatttagtcccacattgcttagagatatagcctgtgtagtatttataaagcttg 41389362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 25589192 - 25589087
Alignment:
Q  227 tgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggt 326  Q
    ||||||||||||||||||||| ||||| ||| ||||||  | || ||||| |  ||||||||||| |||| ||||| ||| |||| |||| |||||||||    
T  25589192 tgtgttgggtgtgaaggggtgaatttagtcc-acattgcttggatatatggcatgtgtagtgtttataaaacttgggcagccctctccttacaagccggt 25589094  T
Q  327 tttgtaa 333  Q
    |||||||    
T  25589093 tttgtaa 25589087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 14596319 - 14596203
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaag 321  Q
    ||||| ||||| |||||||| |||  ||||||||||||||||| ||||||||| | |    |||||||||  ||| ||||| ||| ||||||||| ||||    
T  14596319 ttcatcgtgttcggtgtgaatgggcagatttattcccacattgcctagagataaggctttcgtagtgtttagaaagcttgggcagccctcaccttacaag 14596220  T
Q  322 ccggttttgtaaggttga 339  Q
    |||| |||||||||||||    
T  14596219 ccgg-tttgtaaggttga 14596203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 16015847 - 16015731
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaag 321  Q
    ||||| ||||| |||||||| |||  ||||||||||||||||| ||||||||||| |    |||||||||  ||| ||||| ||| ||||||||| ||||    
T  16015847 ttcatcgtgttcggtgtgaatgggcagatttattcccacattgcctagagatatggctttcgtagtgtttagaaagcttgggcagccctcaccttacaag 16015748  T
Q  322 ccggttttgtaaggttga 339  Q
     ||| |||||||||||||    
T  16015747 tcgg-tttgtaaggttga 16015731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 41387505 - 41387627
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||| ||| ||||||||||| |||| |||||||||| || || |||||| |  ||||||| || ||||  ||||  || | ||||||| ||    
T  41387505 ccttcattgtgttaggtatgaaggggtgggtttagtcccacattgccttgacatatgaactatgtagtgcttataaaatttgggtagccttcaccttaca 41387604  T
Q  320 agccggttttgtaaggttgaatt 342  Q
    |||| ||| ||||||||| ||||    
T  41387605 agcctgttctgtaaggtttaatt 41387627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 39079758 - 39079725
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggattta 253  Q
    ||||||||||||||||||||||||||||||||||    
T  39079758 ccttcattgtgttgggtgtgaaggggtggattta 39079725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 46753108 - 46753157
Alignment:
Q  226 ttgtgttgggtgtgaaggggtggatttattcccacattgactagagatat 275  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||||||||||    
T  46753108 ttgtgttgggtgtgaaggggtagatttagtccaacattgcctagagatat 46753157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 12840701 - 12840625
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaa 296  Q
    ||||| ||||||||||| |||| |||||| |||| | |||||||| ||||||||||| |  ||||||||||| ||||    
T  12840701 ccttcgttgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggcttgtgtagtgtttataaa 12840625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 14092312 - 14092256
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    ||||||||||| ||| ||||| ||||||| |||| |||||||||| |||||||||||    
T  14092312 ccttcattgtgctggatgtgagggggtgggtttagtcccacattgcctagagatatg 14092256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 14402330 - 14402274
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    ||||||||||| ||| ||||| ||||||| |||| |||||||||| |||||||||||    
T  14402330 ccttcattgtgctggatgtgagggggtgggtttagtcccacattgcctagagatatg 14402274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 23721065 - 23721105
Alignment:
Q  188 cccctagccacttaattgcggcattttggttgccttcattg 228  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  23721065 cccctagccacctaattgcggcatttgggttgccttcattg 23721105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 8585065 - 8585108
Alignment:
Q  219 gccttcattgtgttgggtgtgaaggggtggatttattcccacat 262  Q
    |||||||||||||||| | |||||||||||||||| ||||||||    
T  8585065 gccttcattgtgttggctttgaaggggtggatttagtcccacat 8585108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 30899096 - 30899010
Alignment:
Q  243 gggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggtttt 329  Q
    ||||||||||| ||||||||||  |||||||| | |  ||||||||| | |||| ||||| ||| ||||| ||| ||||||||||||    
T  30899096 gggtggatttagtcccacattgcttagagataggtcatgtgtagtgtatataaagcttgggcagccctcatcttacaagccggtttt 30899010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 3973205 - 3973258
Alignment:
Q  282 tgtagtgtttgtaaatcttggacagacctcacctttcaagccggttttgtaagg 335  Q
    |||| ||||| |||| ||||||||  ||||||||| ||||||||||||||||||    
T  3973205 tgtaatgtttataaagcttggacaaccctcaccttacaagccggttttgtaagg 3973258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 21048877 - 21048788
Alignment:
Q  187 gcccctagccacttaattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    |||||||||||| ||||||  |||||| |||||| || | ||||||||||||   |||||| ||||| || || |||| |||||||||||    
T  21048877 gcccctagccacctaattgtcgcatttgggttgcgtttactgtgttgggtgtatgggggtgtatttagtctcatattgcctagagatatg 21048788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 28359058 - 28359135
Alignment:
Q  220 ccttcattgtgttgggtgtgaag-gggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaa 296  Q
    |||||||| | |||||||||||  ||||||||| | |||||||||| ||||||||||  || ||||||||||| ||||    
T  28359058 ccttcattattttgggtgtgaaatgggtggattcagtcccacattgcctagagatatagcctgtgtagtgtttataaa 28359135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 10406668 - 10406600
Alignment:
Q  267 tagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggttttgtaagg 335  Q
    |||||||||| || ||||||||||| |||| | ||| ||| ||||||| | ||||| ||||||||||||    
T  10406668 tagagatatggcctgtgtagtgtttataaagcatgggcagccctcaccgtacaagctggttttgtaagg 10406600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 46870290 - 46870370
Alignment:
Q  222 ttcattgtgttgggtgtgaagggg-tggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttg 301  Q
    |||||||| | ||||||||||||| |||||||| |||||||||| |||| |||||| |  ||||||| ||| |||| ||||    
T  46870290 ttcattgtttagggtgtgaagggggtggatttagtcccacattgcctagggatatggcatgtgtagtatttataaagcttg 46870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 1206307 - 1206193
Alignment:
Q  221 cttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaa 320  Q
    |||||||||||||||||||||||| || ||||| |||||||||  ||||||||||| || ||||||||||| |||| ||| | ||| ||||||||| |||    
T  1206307 cttcattgtgttgggtgtgaagggatgaatttagtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcagccctcaccttacaa 1206208  T
Q  321 gccggttttgtaagg 335  Q
    || || |||||||||    
T  1206207 gctggatttgtaagg 1206193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 18286869 - 18286977
Alignment:
Q  228 gtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggtt 327  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||||| ||  ||||||| || |||| |||||  ||  ||| |||| ||| ||||||    
T  18286869 gtgttgggtgtgaaggggttgatttagtcccacatttcctagagatatggcctatgtagtg-ttataaagcttggggagcactcgccttacaaaccggtt 18286967  T
Q  328 ttgtaaggtt 337  Q
    ||||||||||    
T  18286968 ttgtaaggtt 18286977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 9602116 - 9602078
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattccc 258  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  9602116 ccttcattgtgttgggtgtgaaggggtggatttagtccc 9602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 130796 - 130763
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggattta 253  Q
    ||||||||||||||||||||||||||||||||||    
T  130796 ccttcattgtgttgggtgtgaaggggtggattta 130763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 9156230 - 9156145
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggaca 305  Q
    |||||| |||||| ||| ||||||||||||||||||||||||| |  | |||||||  |  ||||||||||| |||||| ||||||    
T  9156230 ccttcactgtgttaggtttgaaggggtggatttattcccacatcgctttgagatatagcatgtgtagtgtttataaatcatggaca 9156145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 1206049 - 1206006
Alignment:
Q  185 ccgcccctagccacttaattgcggcattttggttgccttcattg 228  Q
    |||||||||||| | |||||||||||||| ||||||||||||||    
T  1206049 ccgcccctagccgcctaattgcggcatttgggttgccttcattg 1206006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 1205677 - 1205639
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggatttattcccac 260  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  1205677 ttcattgtgttgggtgtgaaggggtggattcagtcccac 1205639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 1205993 - 1205874
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtg-tttgtaaatcttggacagacctcacctttc 318  Q
    ||||||| ||||| |||||||||||||||||||| |||  || ||  ||||||||||  || ||||||| ||| |||| ||||| |||  ||| | || |    
T  1205993 ccttcatcgtgttaggtgtgaaggggtggatttagtccatcaatgcttagagatatg-gccttgtagtgttttataaaacttgggcagcactcgcattac 1205895  T
Q  319 aagccggttttgtaaggttga 339  Q
    |||||||| ||||||||||||    
T  1205894 aagccggtcttgtaaggttga 1205874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 48046331 - 48046451
Alignment:
Q  220 ccttcattgtgttgggtgtgaa-ggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttc 318  Q
    |||||| | ||||||||||||| |||||||||||| |||||||||| ||||||||||| |  |||||||||||  |||  |||| | | ||||||||| |    
T  48046331 ccttcactatgttgggtgtgaaaggggtggatttagtcccacattgcctagagatatggcatgtgtagtgtttacaaagtttgggccgccctcaccttac 48046430  T
Q  319 aagccggttttgtaaggttga 339  Q
    ||||||||||||||| |||||    
T  48046431 aagccggttttgtaacgttga 48046451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 23311592 - 23311484
Alignment:
Q  227 tgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggt 326  Q
    |||||||||| |||||||||||||||| ||| ||||||  |||||||||| |  ||||||||||| |||| | ||| ||| | | ||||| |||||||||    
T  23311592 tgtgttgggtttgaaggggtggatttagtcctacattgtttagagatatggcatgtgtagtgtttataaagcgtgggcagcctttaccttacaagccggt 23311493  T
Q  327 tttgtaagg 335  Q
    |||||||||    
T  23311492 tttgtaagg 23311484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 26943000 - 26942886
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||| |||||||||||||||||| |||| ||||| || ||||| | |||||||||||  | ||||||||||| |||| ||| | ||  ||||||||| ||    
T  26943000 cctttattgtgttgggtgtgaagaggtgaatttagtctcacat-gcctagagatatggtctgtgtagtgtttataaagcttaggcacccctcaccttaca 26942902  T
Q  320 agccggttttgtaagg 335  Q
    ||||| ||||||||||    
T  26942901 agccgattttgtaagg 26942886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 52043207 - 52043088
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||| | ||||||||||||||||||||| || ||||||| | | |||||||  | || |||||||| |||| |||   ||| ||||||||| ||    
T  52043207 ccttcattgtatcgggtgtgaaggggtggatttagtctcacattgccaaaagatatggtctgtttagtgtttataaagcttatgcagccctcaccttaca 52043108  T
Q  320 agccggttttgtaaggttga 339  Q
    |||||||||| ||| |||||    
T  52043107 agccggttttataaagttga 52043088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 364
Target Start/End: Complemental strand, 30491080 - 30490939
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaa-tcttggacagacctcacctttc 318  Q
    |||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||| ||  ||| |||||| |||| ||| ||| |  ||||||||| |    
T  30491080 ccttcaatgtgttgggtgtgaaggggtggatttagt-ccacattgcctagatatatggcc--tgtggtgtttataaagtctggga-acccctcaccttac 30490985  T
Q  319 aagccggttttgtaaggttgaatttggcttaacccaatttccaaga 364  Q
    |||||| ||| |||||||||| || |||  ||||||| ||| ||||    
T  30490984 aagccgttttcgtaaggttgagttaggcccaacccaaattctaaga 30490939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 13254349 - 13254402
Alignment:
Q  211 ttttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    ||||| |||||||||||||||||| | ||| |||||||||||| ||||||||||    
T  13254349 ttttgtttgccttcattgtgttggctttgagggggtggatttagtcccacattg 13254402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 339
Target Start/End: Complemental strand, 3137070 - 3136955
Alignment:
Q  223 tcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagc 322  Q
    |||||||| |||||  ||| ||||||||||| |||||||||| ||||||| ||| ||  || ||||||| || | |||||| |  ||||||||| |||||    
T  3137070 tcattgtgctgggttcgaatgggtggatttagtcccacattgcctagaga-atggcctatgcagtgtttatatagcttggagaaccctcaccttacaagc 3136972  T
Q  323 cggttttgtaaggttga 339  Q
    |||| ||||| ||||||    
T  3136971 cggtgttgtagggttga 3136955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 253
Target Start/End: Complemental strand, 26942714 - 26942683
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggattta 253  Q
    ||||||||||||||||||||||||||||||||    
T  26942714 ttcattgtgttgggtgtgaaggggtggattta 26942683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 54595506 - 54595387
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||| ||||||||| |||| ||| |||||| ||| ||||||| | | |  |||||||| || |||| || || ||| ||||||||| ||    
T  54595506 ccttcattgtgttggttgtgaagggatggaattaatcccacgttgcctagagacacggcttgtgtagtgcttttaaagctcgggcagccctcaccttaca 54595407  T
Q  320 agccggttttgtaaggttga 339  Q
    |||  ||||||  |||||||    
T  54595406 agcaagttttgcgaggttga 54595387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 3137762 - 3137656
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||| ||||||  |||||||||| ||| |||||  ||||||||||| ||  |||||||  | |||| ||||  ||| ||||||||| ||    
T  3137762 ccttcattgtgttgg-tgtgaattggtggatttagtccgacattccctagagatatggcctatgtagtg--tataaagcttgtgcagccctcaccttgca 3137666  T
Q  320 agccggtttt 329  Q
    ||||||||||    
T  3137665 agccggtttt 3137656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 54595190 - 54595146
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    |||||||||||  |||||||||||||||||| || ||||||||||    
T  54595190 ccttcattgtgcggggtgtgaaggggtggatatagtcccacattg 54595146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 19811140 - 19811021
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||| |||||||||||||||||  ||||||||| |||||| ||| ||||||||||| || || |||||||| || | ||||| ||  |||  |||| ||    
T  19811140 ccttcgttgtgttgggtgtgaagatgtggatttagtcccacgttgcctagagatatggcctgtttagtgtttttatagcttgggcaacccttgccttaca 19811041  T
Q  320 agccggttttgtaaggttga 339  Q
    ||||||||||||||||||||    
T  19811040 agccggttttgtaaggttga 19811021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 34626903 - 34626789
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||| ||||||||||||||| ||||||||| || ||||||  | ||||||||| |  ||||||||||| |||| ||||| ||| ||||||||| ||    
T  34626903 ccttcattctgttgggtgtgaaggagtggatttagtctcacatttcccagagatatggcatgtgtagtgtttataaagcttgggcagccctcaccttaca 34626804  T
Q  320 agccggttttgtaag 334  Q
    ||||| || ||||||    
T  34626803 agccgattctgtaag 34626789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 41590661 - 41590549
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||       ||||| |||| ||||| ||  ||||| ||| ||    
T  41590661 ccttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatgacc-------tgtttataaagcttgggcaaccctcatcttaca 41590569  T
Q  320 agccggttttgtaaggttga 339  Q
    ||||||||| ||||||||||    
T  41590568 agccggtttcgtaaggttga 41590549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 365
Target Start/End: Complemental strand, 17557848 - 17557707
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaag 321  Q
    ||||||||||  |||||  ||||||| ||||| |||||||||| ||||||||||||  |||||||||||| |||| ||| | ||  ||||||||| ||||    
T  17557848 ttcattgtgtctggtgtacaggggtgaatttaatcccacattgcctagagatatga--cgtgtagtgtttataaagcttaggcaaccctcaccttacaag 17557751  T
Q  322 ccggttttgtaaggttgaatttggcttaacccaatttccaagaa 365  Q
    | | |||||||||||||| || |||  ||||||| ||| |||||    
T  17557750 ctgattttgtaaggttgagttaggcccaacccaaattctaagaa 17557707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 18998370 - 18998488
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaag 321  Q
    ||||||||||||||||||||||||  || ||| || ||||||| ||||||||||  |   |||||||||| |||| ||||  ||| ||||||||| ||||    
T  18998370 ttcattgtgttgggtgtgaaggggcagacttagtctcacattgcctagagatattgcttttgtagtgtttataaagcttgagcagccctcaccttacaag 18998469  T
Q  322 ccgg-ttttgtaaggttga 339  Q
    |||| ||||||||||||||    
T  18998470 ccggtttttgtaaggttga 18998488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 18998693 - 18998755
Alignment:
Q  227 tgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgt 289  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||  ||||||||    
T  18998693 tgtgttgggtgtgaaagggtggatttagtcccacattgcctagagatatgacctatgtagtgt 18998755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 41590357 - 41590232
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||||||||||| |||||||||||||||| |||| | |||||||  ||||| |||||  | |||||||| || |||| ||||| ||  ||||| ||| ||    
T  41590357 ccttcattgtgtcgggtgtgaaggggtgggtttagttccacatttcctagaaatatggtctgtgtagtg-ttataaagcttggtcaaccctcatcttaca 41590259  T
Q  320 agccggttttgtaaggttgaatttggc 346  Q
    ||| |||||||||||||||| ||||||    
T  41590258 agctggttttgtaaggttgagtttggc 41590232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 51188943 - 51188878
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgta 285  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||  |||||||||| || |||||    
T  51188943 ccttcattgtgttgggtttgaaggggtggatttagtcccacattgcttagagatatggcctgtgta 51188878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 19810070 - 19809968
Alignment:
Q  236 tgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggttttgtaagg 335  Q
    |||||||||||||||| | |||||||||| ||||| |||||  | ||||| ||||| |||| ||||| ||| | ||||||| ||||||| ||||||||||    
T  19810070 tgtgaaggggtggatt-agtcccacattgcctagatatatggtctgtgtaatgtttataaagcttgggcagccttcaccttacaagccgattttgtaagg 19809972  T
Q  336 ttga 339  Q
    ||||    
T  19809971 ttga 19809968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 339
Target Start/End: Complemental strand, 19810826 - 19810708
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    ||||||||||||| |||||||||||||| | | | |||||||||| ||||||||||| || ||| | ||||| |||| ||||| ||  | |||||||  |    
T  19810826 ccttcattgtgttaggtgtgaaggggtgcact-agtcccacattgcctagagatatggcctgtgcaatgtttataaagcttgggcaaccttcaccttaga 19810728  T
Q  320 agccggttttgtaaggttga 339  Q
    ||||| ||||||||||||||    
T  19810727 agccgattttgtaaggttga 19810708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 40566395 - 40566324
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgttt 291  Q
    ||||||||||||||||||||||||| |||||| | ||||| |||| |||| |||||| || |||||||||||    
T  40566395 ccttcattgtgttgggtgtgaagggatggattcagtcccatattgcctagcgatatggcctgtgtagtgttt 40566324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 51515689 - 51515761
Alignment:
Q  220 ccttcattgtgttgggtgtgaa-ggggtggatttattcccacattgactagagatatgacccgtgtagtgttt 291  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||  ||||||||||| |  |||||||||||    
T  51515689 ccttcattgtgttgggtgtgaaaggggtggatttagtccgacattacctagagatatgccatgtgtagtgttt 51515761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 6868108 - 6868179
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgttt 291  Q
    |||||||| |||||||| |||||||||||||||| |||||||||   |||||||||| || ||| |||||||    
T  6868108 ccttcattttgttgggtttgaaggggtggatttagtcccacattacttagagatatggcctgtgcagtgttt 6868179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 7907972 - 7907897
Alignment:
Q  222 ttcattgtgttgggtgtgaa-ggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaa 296  Q
    |||||||||||||||||||| |||||||||||| |||||||||    ||||||||| |  ||||||||||| ||||    
T  7907972 ttcattgtgttgggtgtgaaaggggtggatttagtcccacatttctcagagatatggcatgtgtagtgtttataaa 7907897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 12410380 - 12410499
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgac-tagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttc 318  Q
    ||||||| |||||||||||||||| || |||||| |||||||||  | |||||||||| ||  ||||||| || ||||  |||| ||| | ||||||| |    
T  12410380 ccttcatcgtgttgggtgtgaaggagttgatttagtcccacattttcatagagatatggcctatgtagtgcttataaagtttgggcagccttcaccttac 12410479  T
Q  319 aagccggttttgtaaggttg 338  Q
    ||   |||||||||||||||    
T  12410480 aaagtggttttgtaaggttg 12410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 19609226 - 19609179
Alignment:
Q  308 cctcacctttcaagccggttttgtaaggttgaatttggcttaacccaa 355  Q
    ||||||||| |||||||||||||||||||||| || |||| |||||||    
T  19609226 cctcaccttacaagccggttttgtaaggttgagttaggctcaacccaa 19609179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 34626959 - 34626916
Alignment:
Q  185 ccgcccctagccacttaattgcggcattttggttgccttcattg 228  Q
    |||||||||||||| ||||||| |||| ||||||||||||||||    
T  34626959 ccgcccctagccacctaattgcagcatcttggttgccttcattg 34626916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 13978562 - 13978616
Alignment:
Q  222 ttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    ||||||||||||||||||||||| ||  |||| |||||||||| ||||| |||||    
T  13978562 ttcattgtgttgggtgtgaagggatgtctttagtcccacattgtctagatatatg 13978616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 33248459 - 33248409
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactaga 270  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  33248459 ccttcattgtgttgggtgttaacgggtggatttagtctcacattgcctaga 33248409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 33268631 - 33268581
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactaga 270  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  33268631 ccttcattgtgttgggtgttaacgggtggatttagtctcacattgcctaga 33268581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 43423254 - 43423296
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacat 262  Q
    ||||||||||||||| | ||| |||||||||||||||||||||    
T  43423254 ccttcattgtgttggctttgagggggtggatttattcccacat 43423296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 12581473 - 12581376
Alignment:
Q  220 ccttcattgtgttgggtgtg-aaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctt 316  Q
    |||||||||||||||||||| || ||||||||||| |||||| ||| | | ||||||| |  || |||||||| |||| | ||| ||| |||||||||    
T  12581473 ccttcattgtgttgggtgtgaaatgggtggatttagtcccacgttgcccaaagatatggcatgtttagtgtttataaagcatgggcagccctcacctt 12581376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 19459698 - 19459739
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccaca 261  Q
    ||||||||||||||||||||| ||||||| |||| |||||||    
T  19459698 ccttcattgtgttgggtgtgagggggtgggtttagtcccaca 19459739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 51917854 - 51917970
Alignment:
Q  219 gccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttc 318  Q
    ||||||||| ||||| ||||||| ||||||||||| ||| |||||| ||||||||||| |   |||||||||| |||| ||||| | | ||||| ||| |    
T  51917854 gccttcattatgttgagtgtgaaagggtggatttagtcctacattgcctagagatatggcatatgtagtgtttataaagcttgggccgccctcagcttac 51917953  T
Q  319 aagccggttttgtaagg 335  Q
    ||||| |||||||||||    
T  51917954 aagccagttttgtaagg 51917970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 25568479 - 25568591
Alignment:
Q  227 tgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccggt 326  Q
    |||||||||||||||||||||| ||||   |||||||| ||||||| ||||||  |||||||||| |||| ||||| |||   ||||||| | |||||||    
T  25568479 tgtgttgggtgtgaaggggtgggtttagcaccacattgcctagagacatgacctttgtagtgtttataaaccttgggcagctttcaccttactagccggt 25568578  T
Q  327 tttgtaaggttga 339  Q
    || || |||||||    
T  25568579 ttcgttaggttga 25568591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 39225154 - 39225098
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatg 276  Q
    |||||||||||||||||||||||| |||| |||| |||| ||||| |||||||||||    
T  39225154 ccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgcctagagatatg 39225098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 662701 - 662772
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgttt 291  Q
    |||| |||||||||||| ||||||||| |||||| |||||| ||   ||||||||||||| |||||||||||    
T  662701 cctttattgtgttgggtttgaaggggtcgatttagtcccacttttcttagagatatgacctgtgtagtgttt 662772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 53789075 - 53789149
Alignment:
Q  200 taattgcggcattttggttgccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagata 274  Q
    |||||||  ||||| ||||||||||||||||||  ||||||||||| ||||||| |  ||||||| |||||||||    
T  53789075 taattgcaccatttgggttgccttcattgtgttacgtgtgaaggggaggatttagtttcacattgcctagagata 53789149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 351158 - 351234
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaa 296  Q
    |||||||||||||| || ||||||||||| |||| ||||||||||  || |||| ||||  ||||||||||| ||||    
T  351158 ccttcattgtgttgagtttgaaggggtggctttagtcccacattgcttacagatgtgacatgtgtagtgtttataaa 351234  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 34250481 - 34250366
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttca 319  Q
    |||| |||||||| ||| |||||||||| ||||  ||||||||||  |||||||||     ||||||| ||  |||| ||||||||  ||||||||| ||    
T  34250481 ccttaattgtgttaggtttgaaggggtgaatttcgtcccacattgcttagagatattgattgtgtagttttaataaagcttggacaaccctcaccttaca 34250382  T
Q  320 agccggttttgtaagg 335  Q
    || |||||||||||||    
T  34250381 agtcggttttgtaagg 34250366  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 54861500 - 54861533
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggattta 253  Q
    ||||| ||||||||||||||||||||||||||||    
T  54861500 ccttcgttgtgttgggtgtgaaggggtggattta 54861533  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 13769420 - 13769376
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    ||||||||||||||| | ||| |||||||||||| ||||||||||    
T  13769420 ccttcattgtgttggctttgagggggtggatttagtcccacattg 13769376  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 45443255 - 45443299
Alignment:
Q  220 ccttcattgtgttgggtgtgaaggggtggatttattcccacattg 264  Q
    ||||||||||||||| | ||| |||||||||||| ||||||||||    
T  45443255 ccttcattgtgttggctttgagggggtggatttagtcccacattg 45443299  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 47490 - 47381
Alignment:
Q  226 ttgtgttgggtgtgaaggggtggatttattcccacattgactagagatatgacccgtgtagtgtttgtaaatcttggacagacctcacctttcaagccgg 325  Q
    ||||||||||||||||| |||||||||| || |||  ||  | |||||||| || || |||||||  ||||  |||||||| ||||||||| ||| ||      
T  47490 ttgtgttgggtgtgaagtggtggatttagtctcactctgcttggagatatggccagtatagtgttaataaagtttggacagccctcaccttacaatccaa 47391  T
Q  326 ttttgtaagg 335  Q
    ||||||||||    
T  47390 ttttgtaagg 47381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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