View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14442_low_1 (Length: 574)
Name: NF14442_low_1
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 5 - 569
Target Start/End: Complemental strand, 8493453 - 8492896
Alignment:
| Q |
5 |
aaatccatgggcttatgcaactcaagatccatccaaaccgtaactatatatcatcaccaaaacctcaaaccctaacctcttctctgaacccatttccata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8493453 |
aaatccatgggcttatgcaactcaagatccatccaaaccgtaactatatatcatcaccaaaacctcaaaccctaacctct---ctgaacccatttccata |
8493357 |
T |
|
| Q |
105 |
tcttcgccgcacggtggttggttggcgtcgtaggttcacgtttcgtgcgagatgggtagggttatcagggcacaacgtaaaggagcaggctccgttttca |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8493356 |
tcttcgccgcacggtggttgga----gtcgtaggttcacgtttcgtgcgagatgggtagggttatcagggcacaacgtaaaggagcaggctccgttttca |
8493261 |
T |
|
| Q |
205 |
agtcccacactcaccaccgcaaaggcccagcacgtttccgcagttttgatttcggtgaaagaaacggttaccttaaaggagtagtgaacgaaatcattca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8493260 |
agtcccacactcaccaccgcaaaggcccagcacgtttccgcagtcttgatttcggtgaaagaaacggttaccttaaaggagtagtgaacgaaatcattca |
8493161 |
T |
|
| Q |
305 |
cgaccctggtctcggtgcaccactcgctaaggtcactttcagacacccttttaggtataagaaacagaaagagcttttcgttgctgctgagggactttac |
404 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8493160 |
cgacccaggtcgcggtgcaccactcgctaaggtcactttcagacacccttttaggtataagaaacagaaagagcttttcgttgctgctgagggactttac |
8493061 |
T |
|
| Q |
405 |
acaggacagtttatttattgtgggaaaaaagctactcttgttgttgggaatgttttgccattaaggatgattcctgaaggtgcggttatttgtaatgttg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8493060 |
acaggacagtttatttattgtgggaaaaaagctactcttgttgttgggaatgttttgccattaaggatgattcctgaaggtgcggttatttgtaatgttg |
8492961 |
T |
|
| Q |
505 |
aacatcatgttggtgatcgtggtgcttttgctaggtgttctggtgattatgctattgttattagt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8492960 |
aacatcatgttggtgatcgtggtgcttttgctaggtgttctggtgattatgctattgttattagt |
8492896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 177 - 565
Target Start/End: Original strand, 29061903 - 29062291
Alignment:
| Q |
177 |
caacgtaaaggagcaggctccgttttcaagtcccacactcaccaccgcaaaggcccagcacgtttccgcagttttgatttcggtgaaagaaacggttacc |
276 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||| || |||||||| | || ||||| || | |||||||||| |
|
|
| T |
29061903 |
caacgtaagggagcaggttccgttttcaaatcccatacgcaccaccgcaaaggccccgcccgtttccgttccctcgacttcggcgagcgcaacggttacc |
29062002 |
T |
|
| Q |
277 |
ttaaaggagtagtgaacgaaatcattcacgaccctggtctcggtgcaccactcgctaaggtcactttcagacacccttttaggtataagaaacagaaaga |
376 |
Q |
| |
|
| |||||||| || | ||| |||| ||||| || |||| |||||| || || ||||||||||||||| | || || || | ||| |||||||||| || |
|
|
| T |
29062003 |
tcaaaggagtcgtcaccgacgtcatccacgatccaggtcgcggtgctcctcttgctaaggtcactttccgtcatcccttccgttatcagaaacagaagga |
29062102 |
T |
|
| Q |
377 |
gcttttcgttgctgctgagggactttacacaggacagtttatttattgtgggaaaaaagctactcttgttgttgggaatgttttgccattaaggatgatt |
476 |
Q |
| |
|
||||||||||||||||||||| | || || || || |||||||| || || ||||| || |||||||||||||| ||||||||||| | || || |
|
|
| T |
29062103 |
gcttttcgttgctgctgagggtttgtataccggtcaatttatttactgcggtaaaaaggcgactcttgttgttggtaatgttttgcctcttagatctatc |
29062202 |
T |
|
| Q |
477 |
cctgaaggtgcggttatttgtaatgttgaacatcatgttggtgatcgtggtgcttttgctaggtgttctggtgattatgctattgttat |
565 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
29062203 |
cctgaaggtgctgtgatttgtaatgttgagggtcatgttggtgaccgtggtgtttttgctagagcttctggtgattatgctattgttat |
29062291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 252 - 396
Target Start/End: Complemental strand, 54368924 - 54368780
Alignment:
| Q |
252 |
gatttcggtgaaagaaacggttaccttaaaggagtagtgaacgaaatcattcacgaccctggtctcggtgcaccactcgctaaggtcactttcagacacc |
351 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| | |||||||||||||||||| |||| | ||||||||||||||||| |||||||| |||||| |
|
|
| T |
54368924 |
gatttcggtgaacgaaacaattaccttaaaggagtagtcaccgaaatcattcacgacccaggtcgcagtgcaccactcgctaagttcactttccgacacc |
54368825 |
T |
|
| Q |
352 |
cttttaggtataagaaacagaaagagcttttcgttgctgctgagg |
396 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
54368824 |
cttttaggtataagaaacaaaacgagcttttcgttgcttctgagg |
54368780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 509 - 569
Target Start/End: Original strand, 27852022 - 27852082
Alignment:
| Q |
509 |
tcatgttggtgatcgtggtgcttttgctaggtgttctggtgattatgctattgttattagt |
569 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27852022 |
tcatgttggtgaccgtggtgtttttgctagagcttctggtgattatgctattgttattagt |
27852082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University