View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_low_10 (Length: 276)
Name: NF14442_low_10
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 48 - 261
Target Start/End: Complemental strand, 29049463 - 29049246
Alignment:
| Q |
48 |
acatcatgaaaggttaaaatataatttaaaataagtatttaaaattactaagtgtgttaaagggataaacataacatatttatgtagcga----agagat |
143 |
Q |
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| T |
29049463 |
acatcatgaaaggttaaaatataatttaaaataagtatttaaaattactaagtgtgttaaagggataaacataacatattcatgtagcgatcgaagagat |
29049364 |
T |
|
| Q |
144 |
gtttaaaaatgattcttaatgtaggaagagttttaaaactccataagtgttaatatattaagttaatgtaaagagagaaaaatatggttaatattctcaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29049363 |
gtttaaaaatgattcttaatgtaggaagagttttaaaactccataagtgttaatatattaagttaatgtaaagagagaaaaatatggttaatattctcaa |
29049264 |
T |
|
| Q |
244 |
gtttatctatgttataat |
261 |
Q |
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|||||||||||||||||| |
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| T |
29049263 |
gtttatctatgttataat |
29049246 |
T |
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