View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14442_low_12 (Length: 252)

Name: NF14442_low_12
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14442_low_12
NF14442_low_12
[»] chr1 (8 HSPs)
chr1 (19-252)||(47721203-47721436)
chr1 (19-252)||(47728195-47728428)
chr1 (86-224)||(47714122-47714260)
chr1 (19-63)||(47754979-47755023)
chr1 (222-251)||(47214205-47214234)
chr1 (222-250)||(1852997-1853025)
chr1 (223-251)||(34008178-34008206)
chr1 (216-252)||(49647194-49647230)
[»] chr3 (3 HSPs)
chr3 (215-251)||(21005209-21005245)
chr3 (220-250)||(8821625-8821655)
chr3 (222-250)||(28419260-28419288)
[»] chr2 (2 HSPs)
chr2 (215-251)||(15141463-15141499)
chr2 (215-252)||(8427542-8427579)
[»] chr7 (2 HSPs)
chr7 (215-252)||(41018653-41018690)
chr7 (222-251)||(47078284-47078313)
[»] chr4 (4 HSPs)
chr4 (221-250)||(624358-624387)
chr4 (218-251)||(4914899-4914932)
chr4 (216-252)||(36177897-36177933)
chr4 (223-251)||(53654795-53654823)
[»] chr8 (1 HSPs)
chr8 (220-252)||(8233379-8233411)
[»] chr6 (1 HSPs)
chr6 (220-252)||(30457429-30457461)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 47721203 - 47721436
Alignment:
Q  19 aacctaactttcgaaaggatcaaactcagataaaaaagataagtccatggtggggtattgcaggtggggtattgaagagatcatagtattcgctgccaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47721203 aacctaactttcgaaaggatcaaactcagataaaaaagataagtccatggtggggtattgcaggtggggtattgaagagatcatagtattcgctgccaat 47721302  T
Q  119 tgaaaagccaacaaaaccattaccccattcttccttcttcctcccttcatatttctttttgacgtcatggtgaggtactgtttggccgcgttgtccataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47721303 tgaaaagccaacaaaaccattaccccattcttccttcttcctcccttcatatttctttttgacgtcatggtggggtactgtttggccgcgttgtccataa 47721402  T
Q  219 attttagagaaatgatatttgaacatctattttt 252  Q
    |||||||||||||||||||| ||||| |||||||    
T  47721403 attttagagaaatgatatttaaacatttattttt 47721436  T

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Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 47728195 - 47728428
Alignment:
Q  19 aacctaactttcgaaaggatcaaactcagataaaaaagataagtccatggtggggtattgcaggtggggtattgaagagatcatagtattcgctgccaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47728195 aacctaactttcgaaaggatcaaactcagataaaaaagataagtccatggtggggtattgcaggtggggtattgaagagatcatagtattcgctgccaat 47728294  T
Q  119 tgaaaagccaacaaaaccattaccccattcttccttcttcctcccttcatatttctttttgacgtcatggtgaggtactgtttggccgcgttgtccataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47728295 tgaaaagccaacaaaaccattaccccattcttccttcttcctcccttcatatttctttttgacgtcatggtggggtactgtttggccgcgttgtccataa 47728394  T
Q  219 attttagagaaatgatatttgaacatctattttt 252  Q
    |||||||||||||||||||| ||||| |||||||    
T  47728395 attttagagaaatgatatttaaacatttattttt 47728428  T

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Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 47714122 - 47714260
Alignment:
Q  86 ggtattgaagagatcatagtattcgctgccaattgaaaagccaacaaaaccattaccccattcttccttcttcctcccttcatatttctttttgacgtca 185  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47714122 ggtattgaagagatcataatattcgctgccaattgaaaagccaacaaaaccattaccccattcttccttcttcctcccttcatatttctttttcacgtca 47714221  T
Q  186 tggtgaggtactgtttggccgcgttgtccataaatttta 224  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  47714222 tggtggggtactgtttggccgcgttgtccataaatttta 47714260  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 47754979 - 47755023
Alignment:
Q  19 aacctaactttcgaaaggatcaaactcagataaaaaagataagtc 63  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  47754979 aacctaactttcgaaaggatcaaactcatgtaaaaaagataagtc 47755023  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 47214205 - 47214234
Alignment:
Q  222 ttagagaaatgatatttgaacatctatttt 251  Q
    ||||||||||||||||||||||||||||||    
T  47214205 ttagagaaatgatatttgaacatctatttt 47214234  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 1853025 - 1852997
Alignment:
Q  222 ttagagaaatgatatttgaacatctattt 250  Q
    |||||||||||||||||||||||||||||    
T  1853025 ttagagaaatgatatttgaacatctattt 1852997  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 34008178 - 34008206
Alignment:
Q  223 tagagaaatgatatttgaacatctatttt 251  Q
    |||||||||||||||||||||||||||||    
T  34008178 tagagaaatgatatttgaacatctatttt 34008206  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 49647230 - 49647194
Alignment:
Q  216 taaattttagagaaatgatatttgaacatctattttt 252  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  49647230 taaagtttagagaaatgatatttgaacaactattttt 49647194  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 21005245 - 21005209
Alignment:
Q  215 ataaattttagagaaatgatatttgaacatctatttt 251  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21005245 ataatttttagagaaatgatatttgaacatctatttt 21005209  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 8821625 - 8821655
Alignment:
Q  220 ttttagagaaatgatatttgaacatctattt 250  Q
    |||||||||||||||||||||||||||||||    
T  8821625 ttttagagaaatgatatttgaacatctattt 8821655  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 28419288 - 28419260
Alignment:
Q  222 ttagagaaatgatatttgaacatctattt 250  Q
    |||||||||||||||||||||||||||||    
T  28419288 ttagagaaatgatatttgaacatctattt 28419260  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 15141463 - 15141499
Alignment:
Q  215 ataaattttagagaaatgatatttgaacatctatttt 251  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15141463 ataaattttagagaaatgatatttgtacatctatttt 15141499  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 8427542 - 8427579
Alignment:
Q  215 ataaattttagagaaatgatatttgaacatctattttt 252  Q
    |||||| || ||||||||||||||||||||||||||||    
T  8427542 ataaatctttgagaaatgatatttgaacatctattttt 8427579  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 41018653 - 41018690
Alignment:
Q  215 ataaattttagagaaatgatatttgaacatctattttt 252  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  41018653 ataaagtttagagaaatgatatttgaacaactattttt 41018690  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 47078313 - 47078284
Alignment:
Q  222 ttagagaaatgatatttgaacatctatttt 251  Q
    ||||||||||||||||||||||||||||||    
T  47078313 ttagagaaatgatatttgaacatctatttt 47078284  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 250
Target Start/End: Complemental strand, 624387 - 624358
Alignment:
Q  221 tttagagaaatgatatttgaacatctattt 250  Q
    ||||||||||||||||||||||||||||||    
T  624387 tttagagaaatgatatttgaacatctattt 624358  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 4914899 - 4914932
Alignment:
Q  218 aattttagagaaatgatatttgaacatctatttt 251  Q
    |||||||||||||||||||||||||| |||||||    
T  4914899 aattttagagaaatgatatttgaacaactatttt 4914932  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 36177897 - 36177933
Alignment:
Q  216 taaattttagagaaatgatatttgaacatctattttt 252  Q
    |||||||||||||||||||||||||||| | ||||||    
T  36177897 taaattttagagaaatgatatttgaacaaccattttt 36177933  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 53654823 - 53654795
Alignment:
Q  223 tagagaaatgatatttgaacatctatttt 251  Q
    |||||||||||||||||||||||||||||    
T  53654823 tagagaaatgatatttgaacatctatttt 53654795  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 8233379 - 8233411
Alignment:
Q  220 ttttagagaaatgatatttgaacatctattttt 252  Q
    |||||||| ||||||||||||||||||||||||    
T  8233379 ttttagagtaatgatatttgaacatctattttt 8233411  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 30457429 - 30457461
Alignment:
Q  220 ttttagagaaatgatatttgaacatctattttt 252  Q
    |||||||||||||||||||||||| ||||||||    
T  30457429 ttttagagaaatgatatttgaacaactattttt 30457461  T

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