View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_low_5 (Length: 332)
Name: NF14442_low_5
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 51580272 - 51580571
Alignment:
| Q |
17 |
aggttttgtttcttgaaggtggcggccaaatgtttatttgtcaggtgaaggaaagttttaacttcaattatcaattaataacattatatatactttgtat |
116 |
Q |
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| T |
51580272 |
aggttttgtttcttgaaggtggcggccaaatgtttatttgtcaggtgaaagaaagttttaacttcaattattaattaataacattatatatactttgtat |
51580371 |
T |
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| Q |
117 |
tgtacttttaaaagggaactatttttcagaagcaagcaatgatcacatgcacgactaatctagatgttattattttgtagatcgccattggaaccatgat |
216 |
Q |
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| T |
51580372 |
tgtacttttaaaatggaactatttttcagaagcaagcaatga---catgcacgactaatctagatgttattattttgtagatcgccattggaaccatgat |
51580468 |
T |
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| Q |
217 |
tgctttaaagtttggagaaagtggtgaaggatcattaacaaaaggagaagccgagcttcttttattctttataagtgcatatgttgcggcatttgctggg |
316 |
Q |
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| T |
51580469 |
tgctttaaagtttggagaaagtggtgaaggatcattaacaaaaggagaagccgagcttcttttattctttataagtgcatatgttgcggcatttgctggg |
51580568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 14233061 - 14233130
Alignment:
| Q |
243 |
aaggatcattaacaaaaggagaagccgagcttcttttattctttataagtgcatatgttgcggcatttgc |
312 |
Q |
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| T |
14233061 |
aaggatcatttaccaaaggcgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgc |
14233130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 14242735 - 14242804
Alignment:
| Q |
243 |
aaggatcattaacaaaaggagaagccgagcttcttttattctttataagtgcatatgttgcggcatttgc |
312 |
Q |
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| T |
14242735 |
aaggatcatttaccaaaggcgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgc |
14242804 |
T |
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