View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_low_6 (Length: 331)
Name: NF14442_low_6
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 18978423 - 18978738
Alignment:
| Q |
1 |
atataagatgtgagttttaagacgctcatttannnnnnn-cgaattgacatcaatcaaattactgctcaaccaattggagtttcatgtgatgatcaaata |
99 |
Q |
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| T |
18978423 |
atataagatatgagttttaagacgctcattttttttctctcgaatcgatatcaatcaagttactgctcaaccaattggagtttcatgtgatgat-aagtg |
18978521 |
T |
|
| Q |
100 |
tctatcaaagtatttcaccctagactatgggtaacatgcaataccaaatgagaaaagcatgcaaatattatgttacaagcttattgcctctatcaaaaga |
199 |
Q |
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| T |
18978522 |
tatatgaaagtatttcaccctagaatatgggtaacatgcaataccaaacgataaaagcatgcaaatattgtgttctaagcttatttcctctataaaaa-- |
18978619 |
T |
|
| Q |
200 |
aaaagggcaagttgttcaatattgtcggcttaatagcttgcacttcataatatccttg-ttttttagcctttcatttctcaacaaggtcccttgtgcctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18978620 |
aaaagggcaagttgttcaatattgtcggcttaatagctagcacttcataatatccttgtttttttagcctttcatttctcaacaaggtcccttgtgcctt |
18978719 |
T |
|
| Q |
299 |
aatctttatggtcctatat |
317 |
Q |
| |
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||||||||||||||||||| |
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| T |
18978720 |
aatctttatggtcctatat |
18978738 |
T |
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