View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_low_7 (Length: 321)
Name: NF14442_low_7
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 52464283 - 52464575
Alignment:
| Q |
13 |
aaaatccagattgctgtcgtttagtttaagctctacagactcataatttaatcaaactcaacatgaatt-aagtaatttttctttatgaaatggagtatt |
111 |
Q |
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| T |
52464283 |
aaaatccagagtgctgtcgtttagtttaagctctacagagtcataatttaatcaaactcaacatgaattcaagtaatttttctttatgtaatggagtatt |
52464382 |
T |
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| Q |
112 |
ttcttttcatctagactattcaaagggaagtgtaggtctgtgttatcatcatcgatcaaatgctgtttttggaacggataaaagaattaagcctctgcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52464383 |
ttcttttcatctagactattcaaagggaagtgtaggtctgtgttatcatcatcgatcaaatgctgtttttggaacggataaaagaattaagcctctgcaa |
52464482 |
T |
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| Q |
212 |
cctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatcatccgcttcatcttcttctttactcgtcgctgattcactcctcgc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
52464483 |
cctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatcatccgcttcatcttcttctttactcgtcgttgattcacttctcgc |
52464575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 52483604 - 52483705
Alignment:
| Q |
175 |
tgtttttggaacggataaaagaattaagcctctgcaacctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatcatccgcttcatcttc |
274 |
Q |
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||||| || |||| |||||||||| |||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||| |
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| T |
52483604 |
tgtttctgtaacgcataaaagaatcaagcctctgcaaccggagttgcttcttaaacctgtttatgaaatcatcagcttttgcatcaacagcttcatcttc |
52483703 |
T |
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| Q |
275 |
tt |
276 |
Q |
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|| |
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| T |
52483704 |
tt |
52483705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 17236373 - 17236307
Alignment:
| Q |
194 |
agaattaagcctctgcaacctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatca |
260 |
Q |
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| T |
17236373 |
agaatcaagcctttccaacctaagttgctgcttaaacctctttataaaatcatcagcctttgcatca |
17236307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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