View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14442_low_8 (Length: 309)
Name: NF14442_low_8
Description: NF14442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14442_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 15056042 - 15055765
Alignment:
| Q |
16 |
ataattaaactgatgatgcttctgttgacgctgtttattgtggtacctggaatcaagtctaatgtattattagtaatgtgctttatcaattccttaaggg |
115 |
Q |
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| T |
15056042 |
ataattaaactgatgatgcttctgttgacgctgtttattgtggtacctggaatcaagtctaatgtattagtagtaatgtgctttatcaattccttaaggg |
15055943 |
T |
|
| Q |
116 |
tagggtctttctatgtgatattcatcatttggcacacttgttttatttctacatatcgttctttatctataactaatgttgtctccaattactttgctaa |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15055942 |
tagggtctttctatgtgatattcctcatttggcacacttgttttatttctacatatcgttctttatctataactaatgttgtctccaattactttgctaa |
15055843 |
T |
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| Q |
216 |
tatattttattcatgctaaaattgaaaatgatgtctattcgtctatcgtgaatgtgaatctcctttttggcgaatagt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15055842 |
tatattttattcatgctaaaattgaaaatgatgtctattcgtctatcgtgaatgcgaatctcctttttggcgaatagt |
15055765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 15024387 - 15024489
Alignment:
| Q |
143 |
tttggcacacttgttttatttctacatatcgttctttatctataactaatgttgtctccaattacttt---gctaatatattttattcatgctaaaattg |
239 |
Q |
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||||||||||||| ||||||| || || | ||| ||||| ||| |||||||||||||||| |||| || ||||||||||||| |||||||||||| |
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| T |
15024387 |
tttggcacacttgctttatttttatatgtagttgtttatatat---taatgttgtctccaataacttctccgccaatatattttatttatgctaaaattg |
15024483 |
T |
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| Q |
240 |
aaaatg |
245 |
Q |
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|||||| |
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| T |
15024484 |
aaaatg |
15024489 |
T |
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