View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14443_low_2 (Length: 443)

Name: NF14443_low_2
Description: NF14443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14443_low_2
NF14443_low_2
[»] chr7 (3 HSPs)
chr7 (129-427)||(21817430-21817723)
chr7 (19-137)||(21815116-21815234)
chr7 (28-88)||(47203749-47203809)
[»] chr3 (1 HSPs)
chr3 (19-137)||(16463656-16463774)
[»] chr2 (5 HSPs)
chr2 (28-227)||(18336733-18336944)
chr2 (28-86)||(26969396-26969454)
chr2 (28-86)||(26973891-26973949)
chr2 (370-427)||(18337073-18337130)
chr2 (28-86)||(7505560-7505618)
[»] chr6 (2 HSPs)
chr6 (302-428)||(14923326-14923451)
chr6 (16-84)||(14923005-14923073)
[»] chr8 (1 HSPs)
chr8 (322-423)||(13274594-13274695)
[»] chr4 (1 HSPs)
chr4 (28-86)||(14058563-14058621)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 129 - 427
Target Start/End: Original strand, 21817430 - 21817723
Alignment:
Q  129 gcatttctatcttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21817430 gcatttctatcttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttta 21817529  T
Q  229 ctaaacagtattgnnnnnnnnncattcttgttagtatgttcacgtgtttttccacagaaaaagtctcctcacatttcatgctttgagacatatatataca 328  Q
    |||||||||||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    
T  21817530 ctaaacagtattgaaaaaaaa-cattcttgttagtattttcacgtgtttttccacagaaaaagtctcctcacatttcatgctttgagacatat----aca 21817624  T
Q  329 gaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcatctccttgattaaattatattctttctagtttatgtatccttgattac 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21817625 gaaccaatcaaaaatccattttcatcaagtttatacacatcttggatttcatctccttgattaaattatattctttctagtttatgtatccttgattac 21817723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 21815116 - 21815234
Alignment:
Q  19 ggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaatgcctc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21815116 ggattgtcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaatgcctc 21815215  T
Q  119 actaaaacgtgcatttcta 137  Q
    |||||||||||||||||||    
T  21815216 actaaaacgtgcatttcta 21815234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 47203749 - 47203809
Alignment:
Q  28 tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactat 88  Q
    ||||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  47203749 tatttttatactatttattatatttcaaaagctataattttcatgttttatttcatactat 47203809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 16463656 - 16463774
Alignment:
Q  19 ggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaatgcctc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16463656 ggattgtcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatactatgttaattatgatttacttggtcaatgcctc 16463755  T
Q  119 actaaaacgtgcatttcta 137  Q
    |||||||||||||||||||    
T  16463756 actaaaacgtgcatttcta 16463774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 18336733 - 18336944
Alignment:
Q  28 tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact-----------atgttaattatgatttacttggtcaatgcc 116  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||           || ||||||||| |||||||| ||||   |    
T  18336733 tatttttatactatttattatatttcaaaagttatagttatcatgttttatttcatgctgatatgaatacattttaattatggtttacttgatcaaatac 18336832  T
Q  117 tcactaaaacgtgcatttctatc--ttttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaac 214  Q
    || ||| ||||||||||||  ||  | ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||| |||    
T  18336833 tctctataacgtgcatttccttcaatcttgtaaagtggctttaatgtgtaactgattgattttaatttgcaacggattga-ttggcatatatagaaaaac 18336931  T
Q  215 atttttccacttt 227  Q
    |||||||||||||    
T  18336932 atttttccacttt 18336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 26969454 - 26969396
Alignment:
Q  28 tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact 86  Q
    ||||||| | ||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  26969454 tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact 26969396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 26973949 - 26973891
Alignment:
Q  28 tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact 86  Q
    ||||||| | ||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  26973949 tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact 26973891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 18337073 - 18337130
Alignment:
Q  370 ttgggtttcatctccttgattaaattatattctttctagtttatgtatccttgattac 427  Q
    |||| |||||||| |  ||||||||||||||||| |||||||||| ||||||||||||    
T  18337073 ttggatttcatcttccagattaaattatattcttgctagtttatgcatccttgattac 18337130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 7505618 - 7505560
Alignment:
Q  28 tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact 86  Q
    ||||||| | ||||||||||||||| ||||| ||||| | ||||| |||||||||||||    
T  7505618 tatttttatactatttattatattttaaaagctataaatttcatgctttatttcatact 7505560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 302 - 428
Target Start/End: Original strand, 14923326 - 14923451
Alignment:
Q  302 tttcatgctttgagacatatatatacagaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcatctccttgattaaattatattc 401  Q
    ||||||||||| ||||||||| ||||| |||||||  |||||| |||||||||||| | || ||||||||||||||||||| | ||||||||||||||||    
T  14923326 tttcatgcttttagacatatacatacataaccaatacaaaatcaattttcatcaagctaatgcacatcttgggtttcatcttcctgattaaattatattc 14923425  T
Q  402 tttctagtttatgtatccttgattact 428  Q
    || |||| || ||||||||||||||||    
T  14923426 ttgctag-ttctgtatccttgattact 14923451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 14923005 - 14923073
Alignment:
Q  16 ggaggattatcgtatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcata 84  Q
    |||||||| | |||||||| | |||||| |||||||||||||||||||||| ||||  ||| |||||||    
T  14923005 ggaggattgttgtatttttatactatttgttatatttcaaaagttataattttcatactttgtttcata 14923073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 13274695 - 13274594
Alignment:
Q  322 atatacagaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcatctccttgattaaattatattctttctagtttatgtatcctt 421  Q
    ||||||| || ||||  |||||| |||||||||||| | |||||||| ||||||||||||| | |||  ||||||||||||| ||||||| |||||||||    
T  13274695 atatacataaacaatacaaaatcaattttcatcaagctaatacacattttgggtttcatcttcctgaagaaattatattcttgctagtttctgtatcctt 13274596  T
Q  422 ga 423  Q
    ||    
T  13274595 ga 13274594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 14058563 - 14058621
Alignment:
Q  28 tatttttgtgctatttattatatttcaaaagttataattatcatgttttatttcatact 86  Q
    ||||||| | ||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  14058563 tatttttatactatttattatatttcaaaagctataattttcatgctttatttcatact 14058621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University