View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14443_low_3 (Length: 399)
Name: NF14443_low_3
Description: NF14443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14443_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 154 - 382
Target Start/End: Original strand, 38314468 - 38314696
Alignment:
| Q |
154 |
tatttttctgtgaaagattcctcaatcccccataattcaaattcaaattgtatcaagttcttccctctctactttttaaaatttgaatctctcaaaccct |
253 |
Q |
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| T |
38314468 |
tatttttctgtgaaagattcctcaatcccccataattcaaattcaaattgtatcaagttcttccctctctactttttaaaatttgaatctctcaaaccct |
38314567 |
T |
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| Q |
254 |
tatctcattccagtctcttttcttccctcttctttctcctaaccaaggtgcaggagtattatatgtggattatattttgaaagcaatgaagcatttagtt |
353 |
Q |
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| T |
38314568 |
tatctcattccagtctcttttcttccctcttctttctcctaaccaaggtgcaggagtattatatgtggattatattttgaaagcaatgaagcatttagtt |
38314667 |
T |
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| Q |
354 |
attcaaacattttttctttctactatttt |
382 |
Q |
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| T |
38314668 |
attcaaacattttttctttctactatttt |
38314696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 45479643 - 45479519
Alignment:
| Q |
32 |
agcagagagcatcttttccatacattctatatttgacctactgctacttttttaggaatctttctttatactccttcaaaactgtacaacaaaaacaggt |
131 |
Q |
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| T |
45479643 |
agcagagatcatctttttcatacattttatatttgagctactgctactttttcaggaatctttctttatactccttcaaaactgtacaacaaaaacaggt |
45479544 |
T |
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| Q |
132 |
tgtatgattcctcaacttcacctat |
156 |
Q |
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| T |
45479543 |
tgtatgattcctcaacttcacctat |
45479519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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