View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14444_high_1 (Length: 315)
Name: NF14444_high_1
Description: NF14444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14444_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 34 - 300
Target Start/End: Complemental strand, 29142697 - 29142434
Alignment:
| Q |
34 |
tctaaacaagtttttagcatggacatatggtaattgtagttcagttaaaaatatattctttattagtagattttttattctagttacgctttatattttc |
133 |
Q |
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| T |
29142697 |
tctaaacaagtttttagcatggacatatgttaattgtagttcagttaaaagtatattctttattagtagattttttattctagttatacttcatattttc |
29142598 |
T |
|
| Q |
134 |
ttgataaaaaccctcaaaatcaaaatatttaacggtgaaacacaaaatatctttaacgtaacattcttgtaaacttacataaactaagtttgtgtgaaca |
233 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
29142597 |
ttgataacaaccctcaaaattaaaatatttaacggtgaaatccaaaatattcttggcgtaacattctcgtaaacttacataaattaagtttgtgtgaac- |
29142499 |
T |
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| Q |
234 |
atatacttgaacttagtttgtgtaagatctaaaaattcaaaatatacatgtgatatgtgaccaagtt |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29142498 |
--atacttgaacttagtttgtgtaagatctagaaattcaaaatatacatgtgatatgtgaccaagtt |
29142434 |
T |
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