View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14444_low_3 (Length: 303)
Name: NF14444_low_3
Description: NF14444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14444_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 29132162 - 29131885
Alignment:
| Q |
18 |
gagaaaatccagaattcggtgatccaaatgataaccatgttggtataaatttaggtagcatagtatctactaaaattatcaatgtttcagatattggagt |
117 |
Q |
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| T |
29132162 |
gagaaaatccagaattcggtgatccaaatgataaccatgttggtataaatttaggtagcatagtatctactaaaattatcaatgtttcagatattggagt |
29132063 |
T |
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| Q |
118 |
ttctcttaaggatggttttgttcaccatgcttggattgattatgatggtcctcgaagacgaattgacattcgtttaggacttgctaatcaagatgtttat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29132062 |
ttctcttaaggatggttttgttcaccatgcttggattgattatgatggtcctcaaagacgaattgacattcgtttaggacttgctaatcaagatgtttat |
29131963 |
T |
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| Q |
218 |
cctactaagcctattttctcggagtttatggatctgtcaccttatctgaatgagtatatgtttgtaggattctctgct |
295 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29131962 |
cctactaagcctattttctcggagtttatggatctttcaccttatctgaatgagtatatgtttgtaggattctctgct |
29131885 |
T |
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