View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_16 (Length: 476)
Name: NF14445_high_16
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 292 - 458
Target Start/End: Complemental strand, 32835695 - 32835529
Alignment:
| Q |
292 |
ttaagatttttctaaatcagagatgcgacgagcaaccataaggtccttgatttatacttattatttatgtcgatgatattgttgttataagagataattt |
391 |
Q |
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| T |
32835695 |
ttaagattcttctaaatcagagatgggacgagcaaccataaggtccttggtttatacttattatttatgtcgatgatactgttgttataagagataattt |
32835596 |
T |
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| Q |
392 |
gaccgagagacaactacataaagaaaaatcatctgtagagtttgagatgaaagactttggacaattc |
458 |
Q |
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| T |
32835595 |
gatcgagagacaactacataaagaaaaatcattattagagtttgagatgaaagaccttggacaattc |
32835529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 32835875 - 32835789
Alignment:
| Q |
28 |
gattaaatatgttaaaactagtttcaaaattaaaggagaggttcgtcaaagaaaataagttaactcctcgagaaaccatttaaagac |
114 |
Q |
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| T |
32835875 |
gattaaatattttaaaactagtttcaaaattaaaggagaggttagttaaagaaaataagttaactcctcgagaaaccattaaaagac |
32835789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 32835788 - 32835692
Alignment:
| Q |
141 |
agcatattgttcgaaaattgacgtctaaatcttttgatgagattatgctagaacaa---------agtgctgttggctcggatgaagagagtattaa |
228 |
Q |
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| T |
32835788 |
agcatattgttcgaaaattgacgtctaaatcttttgatgagattatgctagaacaaagtgaacaaagtgttgttggctcggatgaagagagtattaa |
32835692 |
T |
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