View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14445_high_19 (Length: 450)

Name: NF14445_high_19
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14445_high_19
NF14445_high_19
[»] chr3 (4 HSPs)
chr3 (1-431)||(1726403-1726833)
chr3 (244-323)||(13361622-13361701)
chr3 (244-323)||(13293506-13293585)
chr3 (25-61)||(13293244-13293280)
[»] chr7 (2 HSPs)
chr7 (225-320)||(4447384-4447479)
chr7 (247-418)||(10347364-10347535)
[»] chr4 (2 HSPs)
chr4 (250-323)||(11450232-11450305)
chr4 (244-292)||(12407100-12407148)
[»] chr6 (2 HSPs)
chr6 (109-181)||(17235817-17235888)
chr6 (292-336)||(17235652-17235696)
[»] chr2 (1 HSPs)
chr2 (250-292)||(22677941-22677983)
[»] chr1 (1 HSPs)
chr1 (242-292)||(23976337-23976387)
[»] chr8 (1 HSPs)
chr8 (232-336)||(17932289-17932393)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 1726403 - 1726833
Alignment:
Q  1 gaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaagggaaatctactaagctcttcaagttgttgagtcagaaga 100  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1726403 gaatctaataagttacctcaagtatcatgagatggagcttgttggagatgaatccgctaagggaaatctactaagctcttcaagttgttgagtcagaaga 1726502  T
Q  101 gactctagatggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaagaagaaaaatgtttccaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1726503 gactctagatggagaatctgaagatgggttagatgctgaa---------tttctgaccaaaatattcaagtaccttaccaagaagaaaaatgtttccaac 1726593  T
Q  201 tagaactagtggatctaaaggatcaggctacaagg---------atgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgt 291  Q
    |||||||||||||||||||||||||| ||||||||         ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  1726594 tagaactagtggatctaaaggatcagactacaaggatgagaaggatgattagaagggtttcttcaacagcaagaaacctggtcacttcattgctgattgt 1726693  T
Q  292 ctagagttgcagacggacaagtcaaagaaggaaatctctaagaagtaaagattcaaaattagagtcaagaaaggtttcatgtcaacatgggatgaacttg 391  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1726694 ctagagttgcagacgaacaagtcaaagaaggaaatctctaagaaataaagattcaaaattagattcaagaaaggtttcatgtcaacatgggatgaacttg 1726793  T
Q  392 atgaagaaactaatgaagaagaagccattatgactttgat 431  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  1726794 atgaagaaactaatgaagaagaagccaatatgactttgat 1726833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 13361701 - 13361622
Alignment:
Q  244 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 323  Q
    ||||||||||||  | ||||||||| || ||| ||||||||||||||||||||||| ||||  |||||||||||||||||    
T  13361701 aagggttgcttccgctgcaagaaacttggtcatttcattgctgattgtctagagttacagaaagacaagtcaaagaagga 13361622  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 13293506 - 13293585
Alignment:
Q  244 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 323  Q
    ||||||||||||  | ||||||||| || ||| ||||||||||| ||||||||||| ||||  ||||||| |||||||||    
T  13293506 aagggttgcttccgctgcaagaaacttggtcatttcattgctgactgtctagagttacagaaagacaagtgaaagaagga 13293585  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 13293244 - 13293280
Alignment:
Q  25 tcatgagatggagcttgttggagatgaacccgctaag 61  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  13293244 tcatgagattgagcttgttggagatgaacctgctaag 13293280  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 4447479 - 4447384
Alignment:
Q  225 aggctacaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaa 320  Q
    |||||| || ||| || ||||||| ||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  4447479 aggctagaaagataatcagaagggatgcttcaactgcaagaaacctgatcacttcattactgactgtctagagttgcagaaggacaagtcaaagaa 4447384  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 10347364 - 10347535
Alignment:
Q  247 ggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaaggaaatctctaagaagtaaagattca 346  Q
    |||||||||||  |||| |||| ||  ||||||||| |||| |||| |||||| | || | |||||| |||||| |||| |||||||||| | |  ||||    
T  10347364 ggttgcttcaattgcaaaaaacttgtccacttcatttctgactgtccagagttactgaagaacaagttaaagaatgaaagctctaagaaggagaatttca 10347463  T
Q  347 aaattagagtcaagaaaggtttcatgtcaacatgggatgaacttgatgaagaaactaatgaagaagaagcca 418  Q
    |||  | |||||| ||| ||  |||| |||||||||| || ||| ||||| ||||| |||||||||||||||    
T  10347464 aaagcaaagtcaataaaagtcacatggcaacatgggaagatcttcatgaataaactgatgaagaagaagcca 10347535  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 11450232 - 11450305
Alignment:
Q  250 tgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaagga 323  Q
    ||||||||||||||||||| |||||| ||||||| |||||||| |||||| |||| ||||||||| ||||||||    
T  11450232 tgcttcaacagcaagaaacttgatcatttcattgttgattgtccagagttacagaaggacaagtcgaagaagga 11450305  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 12407100 - 12407148
Alignment:
Q  244 aagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtc 292  Q
    ||||| ||||||||| | ||||||| || ||||||||||||||||||||    
T  12407100 aagggatgcttcaactgtaagaaacctggtcacttcattgctgattgtc 12407148  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 17235888 - 17235817
Alignment:
Q  109 atggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaa 181  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||||| || | ||||||| |||||    
T  17235888 atggagaatctgaagatga-ttagatgctaaagagatgacatttctgaccaaaagatatcagtacctgaccaa 17235817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 17235696 - 17235652
Alignment:
Q  292 ctagagttgcagacggacaagtcaaagaaggaaatctctaagaag 336  Q
    ||||||||||||| |||| || ||||||| |||||||||||||||    
T  17235696 ctagagttgcagaaggacgagccaaagaaagaaatctctaagaag 17235652  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 22677983 - 22677941
Alignment:
Q  250 tgcttcaacagcaagaaacatgatcacttcattgctgattgtc 292  Q
    ||||||||| ||||||||| || ||||||||||||||||||||    
T  22677983 tgcttcaactgcaagaaacttggtcacttcattgctgattgtc 22677941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 23976337 - 23976387
Alignment:
Q  242 agaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtc 292  Q
    ||||||| ||||||||| ||||||||  || ||||||||||||||||||||    
T  23976337 agaagggatgcttcaactgcaagaaatctggtcacttcattgctgattgtc 23976387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 17932289 - 17932393
Alignment:
Q  232 aaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgctgattgtctagagttgcagacggacaagtcaaagaaggaaatctcta 331  Q
    ||||||||| |||||||||||||| || ||||||| | || |||| | ||| ||  ||||| ||| ||||| | ||||||||  ||||| |||| |||||    
T  17932289 aaggatgatcagaagggttgcttccactgcaagaagcctggtcacgtgattacttgttgtccagatttgcaaaaggacaagtgtaagaaagaaagctcta 17932388  T
Q  332 agaag 336  Q
    |||||    
T  17932389 agaag 17932393  T

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