View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14445_high_2 (Length: 827)
Name: NF14445_high_2
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_2 |
 | |
|
| [»] scaffold0728 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 725; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 16 - 812
Target Start/End: Complemental strand, 11688891 - 11688104
Alignment:
| Q |
16 |
cttgtgggactgataaaaccactgctcttcattgtgctgcttcaagtggtacggttaatgctgctgatgctgtaaaattgcttttatcagctggcgctga |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688891 |
cttgcgggactgataaaaccactgctcttcattgtgctgcttcaagtggtacggttaatgctgttgatgctgtaaaattgcttttatcagctggcgctga |
11688792 |
T |
|
| Q |
116 |
catctattgtgtcgatgctaatgggaaccgtccaatggatgttattgttcttcctattgttgttccccataagctcgaagtggtgaaaagaagccttgaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
11688791 |
catctattgtgtcgatgctaatgggaaccgtccaatggatgttattgttcttcctattgttgttccccataagctcgaagtcgtgaaaagaagtcttgaa |
11688692 |
T |
|
| Q |
216 |
caacttctctcaagtggtacggttagtgctgctgatgagtctgttgatgatggttcgcttccgctgtcatcttttgaaaaggagtctccatcctctcccg |
315 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11688691 |
caacttctctcaaat---------agtgctgctgatgagtctgttgatgatggttcgcttccgctgtcatcttttgaaaaggggtctccatcctctcccg |
11688601 |
T |
|
| Q |
316 |
tggctccaaagttgaccgacacagctgttagtcctacaccagaaaagaaaaaatatccaattgatccatcaattcctgatataagaaacagcatatatgc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688600 |
tggctccaaagttgaccgacacagctgttagttctacaccagaaaagaaaaaatatccaattgatccatcaattcctgatataagaaacagcatatatgc |
11688501 |
T |
|
| Q |
416 |
caccgatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggatcgagtgtcctttttaccatcctaatgagaat |
515 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11688500 |
cacagatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggaccgagtgtcctttttaccatcctaatgagaat |
11688401 |
T |
|
| Q |
516 |
gcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaattagggattgcaaacgtggtgatatgtgtgaatatgctc |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688400 |
gcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaactagggattgcaaacgtggtgatatgtgtgaatatgctc |
11688301 |
T |
|
| Q |
616 |
atggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggtgtgcttttttgcacatgt |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688300 |
atggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggtgtgcttttttgcacatgt |
11688201 |
T |
|
| Q |
716 |
tgctgaagagctgcgtccatcgcatgcttccattagatcagctgcatctgctcctattgtcatggacatggctgcttcaacgagcctttatcgtggt |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688200 |
tgctgaagagctgcgtccatcgcatgcttccattagatcagctgcatctgctcctattgtcatggacatggctgcttcaacgagcctttatcgtggt |
11688104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 290 - 734
Target Start/End: Complemental strand, 11754279 - 11753841
Alignment:
| Q |
290 |
tgaaaaggagtctccatcctctcccgtggctccaaagttgaccgacacagctgttagtcctacaccagaaaagaaaaaatatccaattgatccatcaatt |
389 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||| |||||||||||||||| | || || ||||||||||| |||||||||||| || || |
|
|
| T |
11754279 |
tgaaaatgaatctccatcctctcctgtggctccaaagtttaccgacacagctgttaattctgcatcagaaaagaaagaatatccaattg------cactt |
11754186 |
T |
|
| Q |
390 |
cctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggatcgagt |
489 |
Q |
| |
|
|| | || || |||||| || ||||| ||||||||||||||||||||| | ||||| |||||||||| |||||||||| ||||| |||||| ||||| |
|
|
| T |
11754185 |
ccaagtgtagaaagcagcatgtacgccacagatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggaccgagt |
11754086 |
T |
|
| Q |
490 |
gtcctttttaccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaattagggattgcaa |
589 |
Q |
| |
|
|||||||| | |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||| ||||| |
|
|
| T |
11754085 |
gtccttttaaacatcctcatgagaatgctcgaaggagagaccttagaaagttcacctacagctgtgtaccatgccctgattttaaaaaaggggactgcaa |
11753986 |
T |
|
| Q |
590 |
acgtggtgatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaac |
689 |
Q |
| |
|
||||| |||| |||||||| |||||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||| || |
|
|
| T |
11753985 |
acgtgcagatacgtgtgaatttgctcatggactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgac |
11753886 |
T |
|
| Q |
690 |
cgaaaggtgtgcttttttgcacatgttgctgaagagctgcgtcca |
734 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11753885 |
cgaaaggtgtgcttttttgcacacttagctgaagagctgcgtcca |
11753841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 300 - 703
Target Start/End: Complemental strand, 9314998 - 9314595
Alignment:
| Q |
300 |
tctccatcctctcccgtggctccaaagttgaccgacacagctgttagtcctacaccagaaaagaaaaaatatccaattgatccatcaattcctgatataa |
399 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || |||||||||| | ||||| ||||||||||| | |||||| |||| ||||| ||||||| |||| |
|
|
| T |
9314998 |
tctccatcctctcctgtggctcccaagtttacagatacagctgttaattctacatcagaaaagaaagagtatccagttgacccatctcttcctgacataa |
9314899 |
T |
|
| Q |
400 |
gaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggatcgagtgtccttttta |
499 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| ||||||| | || |||| |||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
9314898 |
aaaacagcatgtatgccacagatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgcatactctcatgattggactgagtgtccttttgt |
9314799 |
T |
|
| Q |
500 |
ccatcctaatgagaatgcacgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaattagggattgcaaacgtggtgat |
599 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| |||| |||| ||| |
|
|
| T |
9314798 |
gcatcctggagagaatgctcgaaggagagaccctagaaagtttcactacagctgtgtgccatgccctgattttaggaaaggggcttgccgacgttcggat |
9314699 |
T |
|
| Q |
600 |
atgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggtgt |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||| |||||||| |||| ||||||||||| ||||| |
|
|
| T |
9314698 |
atgtgtgaatatgctcatggagtattcgagtgctggctacacccagctcagtatcggacaaggctgtgcaaagacggtatgggttgtaaccgaagggtgt |
9314599 |
T |
|
| Q |
700 |
gctt |
703 |
Q |
| |
|
|||| |
|
|
| T |
9314598 |
gctt |
9314595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 9315310 - 9315101
Alignment:
| Q |
18 |
tgtgggactgataaaaccactgctcttcattgtgctgcttcaagtggtacggttaatgctgctgatgctgtaaaattgcttttatcagctggcgctgaca |
117 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||||||| ||||||||| | |||||||||| ||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
9315310 |
tgtggaactgataaaagcactgctcttcactgtgctgcctcaagtggttcagttaatgctgttgatgctataaaattgcttttatcagctggtgctgata |
9315211 |
T |
|
| Q |
118 |
tctattgtgtcgatgctaatgggaaccgtccaatggatgttattgttcttcctattgttgttccccataagctcgaagtggtgaaaagaagccttgaaca |
217 |
Q |
| |
|
|| ||| ||| |||||||||||||| || || |||||||||| ||| |||||||||||||||| ||||||||||||| || |||| || |||||| | |
|
|
| T |
9315210 |
tcaattctgtggatgctaatgggaaacgccctgtggatgttatcgttgttcctattgttgttcctcataagctcgaaggtgttaaaacaattcttgaaga |
9315111 |
T |
|
| Q |
218 |
acttctctca |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
9315110 |
acttctctca |
9315101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 751 - 812
Target Start/End: Complemental strand, 11753803 - 11753742
Alignment:
| Q |
751 |
gatcagctgcatctgctcctattgtcatggacatggctgcttcaacgagcctttatcgtggt |
812 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
11753803 |
gatcagctgcatctgctcccaatgtcatggacaatgctgctgcaacgagcctttatcgtggt |
11753742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 4520 - 4609
Alignment:
| Q |
369 |
tatccaattgatccatcaattcctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgt |
458 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||| ||||||||| ||||| | |||||||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
4520 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgt |
4609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 4748 - 4824
Alignment:
| Q |
597 |
gatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaaga |
673 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| | ||||| ||||| |
|
|
| T |
4748 |
gataagtgtgaatatgctcatgggatattcgagtgctggctacacccagatcagtatcgaacacgactctgtaaaga |
4824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 19408954 - 19409043
Alignment:
| Q |
369 |
tatccaattgatccatcaattcctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggtccttctttgt |
458 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||| ||||||||| ||||| | |||||||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
19408954 |
tatccagttgatccatcatttcctggtataaaaaacagcatgtatgcaagcgatgaatttcggatgttttctttcaaggtccttcgttgt |
19409043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 19409182 - 19409258
Alignment:
| Q |
597 |
gatatgtgtgaatatgctcatggagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaaga |
673 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| | ||||| ||||| |
|
|
| T |
19409182 |
gataagtgtgaatatgctcatgggatattcgagtgctggctacacccagatcagtatcgaacacgactctgtaaaga |
19409258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 360 - 448
Target Start/End: Original strand, 36456153 - 36456241
Alignment:
| Q |
360 |
aagaaaaaatatccaattgatccatcaattcctgatataagaaacagcatatatgccaccgatgaatttcgcatgtattcggtcaaggt |
448 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||| | |||||||||||| | || ||||||||||| |||||||| ||||||| |
|
|
| T |
36456153 |
aagaaagaatatcctgttgatccatcccttcctgatatcaaaaacagcatatactcaactgatgaatttcgaatgtattctttcaaggt |
36456241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University