View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_21 (Length: 435)
Name: NF14445_high_21
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 4 - 431
Target Start/End: Complemental strand, 34812198 - 34811758
Alignment:
| Q |
4 |
ggatagtatttttaatattggtaccaatgttggattactccaccttacacaggttgatggtgggcaagtgtaaactgaactctactaca---tataatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34812198 |
ggatagtatttttaatattggtaccaatgttggattactccaccttacacaggttgatggtgggcaagtgtaaactgaactctactacaacatataatga |
34812099 |
T |
|
| Q |
101 |
aatttacatggtgtgtc---------gcaaatctaaattccaaacatgtcgtggtaattgttgtttccagtattttgcacacttgtttagtatctctaga |
191 |
Q |
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| T |
34812098 |
aatttacatggtgtgtcaatttataagaaaatctaaattccaaacatgtcgtggtaattgttgtttccagtattttgcaaacttgtttagtatctctaga |
34811999 |
T |
|
| Q |
192 |
tacatgtagtggtgatactacctctgccatttcnnnnnnnnnttaaat-tttaaaatatactcctgccaatcatttttatttttataggaaactagtctg |
290 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34811998 |
tacatgtagtggtgatactacctctgccatttcaaaaaaaaaaaaaaaatttaaaatatactcctgccaatcatttttatttttataggaaactagtctg |
34811899 |
T |
|
| Q |
291 |
ctgattttaattacaagaaattttgatcaatttttaagtgtatatggataacttcatttctctgtttgcccaacatgtctattttcatttgatatatgtt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34811898 |
ctgattttaattacaagaaattttgatcaatttttaagtgtatatggataacttcacttctctgtttgcccaacatgtctattttcatttgatatatgtt |
34811799 |
T |
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| Q |
391 |
acttcttactcacacttaatttccaacaacctttgcttctc |
431 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
34811798 |
acttcttactcacacttaatttccaacaacctttccttctc |
34811758 |
T |
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