View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_30 (Length: 370)
Name: NF14445_high_30
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 39480839 - 39480497
Alignment:
| Q |
19 |
ctctggacatggaacacacacttcatccactgctggtggagttccggtgccaatggcgagtgtatttggttatgcaaatggcgtggcaagaggtatggct |
118 |
Q |
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| T |
39480839 |
ctctggacatggaacacacacttcatccactgctggtggagttccggtgccaatggcgagtgtatttggttatgcaaatggcgtggcaagaggtatggct |
39480740 |
T |
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| Q |
119 |
cccggtgctcacattgcagtgtacaaagtgtgctggttcaatggctgttataactctgacatcatggctgcaatggatgtggcaatcagagacggtgtgg |
218 |
Q |
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| T |
39480739 |
cccggtgctcacattgcagtgtacaaagtgtgctggttcaatggctgttataactctgacatcatggctgcaatggatgtggcaatcagagatggtgtgg |
39480640 |
T |
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| Q |
219 |
acgttctatccttgtctctaggcggtttcccggtgccactatatgatgatagtattgccattggaagctttcgagcaatggagaaagggatttcagttat |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39480639 |
acgttctatccttgtctctaggtggtttcccggtgccactatatgatgatagtattgccattggaagctttcgagcaatggagaaagggatttcagttat |
39480540 |
T |
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| Q |
319 |
atgtgcggcaggaaacaatggcccaatggcgatgtctgttgcc |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39480539 |
atgtgcggcaggaaacaatggcccaatggcgatgtctgttgcc |
39480497 |
T |
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