View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_35 (Length: 335)
Name: NF14445_high_35
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 25675271 - 25675528
Alignment:
| Q |
1 |
attggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatggaggcagcttgtaagggatgtgtaaaatt |
100 |
Q |
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| T |
25675271 |
attggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatggaggcagcttgtaagggatgtgtaaaatt |
25675370 |
T |
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| Q |
101 |
gaaaatgaatgggatcactc--atgatcactgatgtata--actatgttttagagcttaagaacaatctattgaacatttacaagaaaatggtttgactg |
196 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25675371 |
gaaaatgaatgggatcactcatatgatcactgatgtataatactatgttttagagcttaagaacaatctattgaacatttacaagaaaatggtttgactg |
25675470 |
T |
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| Q |
197 |
tgatgttccacagttccaatcaagaacaatcaagttgtatcatcctcataatcatttt |
254 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
25675471 |
tgatgttccacagttccaatcaagaaaaatcaagctgtatcatcctcataatcatttt |
25675528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 4855017 - 4854759
Alignment:
| Q |
1 |
attggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatggaggcagcttgtaagggatgtgtaaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4855017 |
attggaagatgattttgaggtttgagactgaaattggaagccatggaaatctttcatggtgggtaaggatggaggcagcttgtaagggatgtgtaaaatt |
4854918 |
T |
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| Q |
101 |
gaaaatgaatgggatcactc--atgatcactgatgtata--actatgttttagagcttaagaacaatctattgaacatttacaagaaaatggtttgactg |
196 |
Q |
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|||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4854917 |
gaaaatgaatgggatcactcatatgatcactgatgtataatattatgttttagagcttaagaacaatctattgaacatttacaagaaaatggtttgactg |
4854818 |
T |
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| Q |
197 |
tgatgttccacagttccaatcaagaacaatcaagttgtatcatcctcataatcattttt |
255 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
4854817 |
tgatgttccacagttccaatcaagaaaaatcaagctgtatcatcctcataatcattttt |
4854759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 46633978 - 46633811
Alignment:
| Q |
69 |
atggaggcagcttgtaagggatgtgtaaaattgaaaatgaatgggatcactc--atgatcactgatgtataa-----ctatgttttagagct----taag |
157 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |
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| T |
46633978 |
atggaggtagcttgtaagggatgtgtaaaattgaaaacgaatgggatcactcatatgatcactgatgtataataatgctatgttttagagcttatataag |
46633879 |
T |
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| Q |
158 |
aacaatc-------tattgaacatttacaagaaaatggtttgactgtgatgttccacagttccaatca |
218 |
Q |
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||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633878 |
aacaatcaattcgacattggatatttacaagaaaatggtttgactgtgatgttccacagttccaatca |
46633811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 32211218 - 32211288
Alignment:
| Q |
251 |
ttttttaaagaaaacttagatcactatttgaaaaaatatatcttatttatcatcatatgtctattattatt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32211218 |
ttttttaaagaaaacttagatcactatttgaaaaaatatatcttatttatcatcatatgtctattattatt |
32211288 |
T |
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