View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_39 (Length: 316)
Name: NF14445_high_39
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 48412261 - 48411955
Alignment:
| Q |
7 |
ctattcccatgaaagatgcttataaaggcgatgatgattcggaccgttctttcattgaatcactcgttggtatgtccaacaaggaattttcagaagaaga |
106 |
Q |
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| T |
48412261 |
ctattcccatgaaagatgcttataaaggcgatgatgattcggaccgttctttcattgaatcactcgttggtatgtccaacaaggaattttcagaagaaga |
48412162 |
T |
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| Q |
107 |
acttaatgggtctgcaaaaaagaagaagaaaattgagtgttcacttgagttggaatctttgaatttggatccagaaaatattgcacgtgttgttcccgga |
206 |
Q |
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| T |
48412161 |
acttaatgggtctgcaaaaaagaagaagaaaattgagtgttcacttgagttggaatctttgaatttggatccagaaaatattgcacgtgttgttcccgga |
48412062 |
T |
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| Q |
207 |
aggataacccaaatgcggttttgcccttccaatgatgttaagatggtggcagcgggtaacaaattcggggatattgggttctggaatgttggagaaagtg |
306 |
Q |
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| T |
48412061 |
aggataacccaaatgcggttttgcccttccaatgatgttaagatggtggcagcgggtaacaaattcggtgatattgggttctggaatgttggagaaagtg |
48411962 |
T |
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| Q |
307 |
agatttt |
313 |
Q |
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| T |
48411961 |
agatttt |
48411955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 121 - 313
Target Start/End: Complemental strand, 48418705 - 48418510
Alignment:
| Q |
121 |
caaaaaagaagaagaaaattgagtgttcacttgagttggaatctttgaatttggatccagaaaatattgcacgtgttgttcc---cggaaggataaccca |
217 |
Q |
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| T |
48418705 |
caaaaaataggaagaaaattgagtgttcacttgagttggaatctttgtctttggatcgtaaaaatatagcacgtgttgttcctgacggcggcataactca |
48418606 |
T |
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| Q |
218 |
aatgcggttttgcccttccaatgatgttaagatggtggcagcgggtaacaaattcggggatattgggttctggaatgttggagaaagtgagatttt |
313 |
Q |
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| T |
48418605 |
cttgcgatttttaccttccaatgatttcaagatggtagtagccggtaacagagtcggggatattgggttctggaatgttggagaaagtgaggtttt |
48418510 |
T |
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