View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14445_high_4 (Length: 688)
Name: NF14445_high_4
Description: NF14445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14445_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 19 - 671
Target Start/End: Original strand, 1514430 - 1515082
Alignment:
| Q |
19 |
gaatgtatccaaacacaaattcaactcacttttagttggagtcaattcttgtcaccacagaaccaaacatacctatgtgagggaattgaccagggttgtc |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514430 |
gaatgtatccaaacacaaattcaattcacttttagttagaatcaattcttgtcaccacagaaccaaacatacctatgtgagggaattgaccagggttgtc |
1514529 |
T |
|
| Q |
119 |
aaatagcagtgtcatagcgctttgttgtagcagaatttaaacaaattgctgttattgtgtgatactttagtataaagtgttgtcaaatagcagcacttta |
218 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1514530 |
aaatagcagtgtcatagcgctttagtgtaccagaatttaaacaaattgctgttattgtgtgatactttagtgtaaagtgttgtcaaatagcagcacttta |
1514629 |
T |
|
| Q |
219 |
gcattgtagcgtagtggaatttgaactaactattattttcagtgatatatgattgaaataactactctggtttgcttaggttaattttctgacctttatg |
318 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514630 |
gcattgtagcgttgtggaatttgaactaactattattttcagtgatatatgattgaaataactactctggtttgcttaggttaattttctgacctttatg |
1514729 |
T |
|
| Q |
319 |
aatccaatgtcattactgatcaatcgtctacgatgttctttacaaattttcctaataatgcttaggatatatacatcacacaaattgcaacttttgcttg |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
1514730 |
aatccaatgtcattactgatcaatcgtctacgatgttctttacaaattttcctaatattgcttaggatatatagatcactcaaattgcaacttttgcttg |
1514829 |
T |
|
| Q |
419 |
cttgagttaaaacattataaaaattttatttatcttatattttaatcattgtacttttgatgtttttatataactataccataatatgttgtatctgtac |
518 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514830 |
cttgagttaaaacattataaaaattgtatttatcttatattttaatcattgtacttttgatgtttttatataactataccataatatgttgtatctgtac |
1514929 |
T |
|
| Q |
519 |
tctagttttgagtaataccccatacatgcactgtaccgatattcatactcagatctatgaaacttacccatcaaattatgtcctctcctagtgtaagaga |
618 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1514930 |
tctagttttgagtaataccccatacatgcactgtactgatattcatactcagatctatgaaacttacccatcaaattatgtcctctcctagtggaagaga |
1515029 |
T |
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| Q |
619 |
ccaatatgaaaccatagtgctttatagtaattaagttaaacctctgcggcctt |
671 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1515030 |
ccaatatgaaaccatagtgctttatagtaattaagttaaacctctgcagcctt |
1515082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 3335181 - 3335209
Alignment:
| Q |
184 |
tttagtataaagtgttgtcaaatagcagc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3335181 |
tttagtataaagtgttgtcaaatagcagc |
3335209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 16972033 - 16971981
Alignment:
| Q |
38 |
ttcaactcacttttagttggagtcaattcttgtcaccacagaaccaaacatac |
90 |
Q |
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|
| T |
16972033 |
ttcaactcacttttagtctgaatcaattcttgtcaccgtagaaccaaacatac |
16971981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 90
Target Start/End: Complemental strand, 9695399 - 9695369
Alignment:
| Q |
60 |
tcaattcttgtcaccacagaaccaaacatac |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
9695399 |
tcaattcttgtcaccacagaaccaaacatac |
9695369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 26466072 - 26466137
Alignment:
| Q |
193 |
aagtgttgtcaaatagcagcactttagcattgtagcgtagtggaatttgaactaactattattttc |
258 |
Q |
| |
|
||||||||||||||| | || || || ||||||||| ||||||||||||||| ||| |||||||| |
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| T |
26466072 |
aagtgttgtcaaatacctgcgctatatcattgtagcatagtggaatttgaacaaaccgttattttc |
26466137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 44458253 - 44458211
Alignment:
| Q |
184 |
tttagtataaagtgttgtcaaatagcagcactttagcattgta |
226 |
Q |
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|
| T |
44458253 |
tttagtacaaagtattgtcaaatagcagcactatagcattgta |
44458211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 8130874 - 8130819
Alignment:
| Q |
187 |
agtataaagtgttgtcaaatagcagcactttagcattgtagcgtagtggaatttgaa |
243 |
Q |
| |
|
|||| ||| |||||| ||||||||||||| ||||| |||||||||| |||||||||| |
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|
| T |
8130874 |
agtacaaattgttgttaaatagcagcactatagca-tgtagcgtagcggaatttgaa |
8130819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 50402678 - 50402650
Alignment:
| Q |
184 |
tttagtataaagtgttgtcaaatagcagc |
212 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50402678 |
tttagtataaagtgttgtcaaatagcagc |
50402650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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